View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_102 (Length: 333)
Name: NF8208A_low_102
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_102 |
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Alignment Details
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 52610618 - 52610686
Alignment:
| Q |
249 |
atgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
317 |
Q |
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| T |
52610618 |
atgttgttattggcattagccacacatgttgaaatctcatctgttataaaagtttgcactctatgctgt |
52610686 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 23881429 - 23881375
Alignment:
| Q |
263 |
attagccacacatgttgaaatctcatatgttataaaagtttgtactctatgctgt |
317 |
Q |
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| T |
23881429 |
attagccacacatgttgaaatctcatctgttataaaagtttgtactctatgctgt |
23881375 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 36646299 - 36646371
Alignment:
| Q |
60 |
tttgctaaataagctgcctaaagctgccgttgttttaactgataatcaaaactgatcatgtccttgctaactt |
132 |
Q |
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| T |
36646299 |
tttgctaaataagctgcctaacactggtgttgttttaacagagaatcagaactgatcctgaccttgctaactt |
36646371 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 31330946 - 31331009
Alignment:
| Q |
249 |
atgttgttattggcattagccacacatgttgaaatctcatatgttataaaagtttgtactctat |
312 |
Q |
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| T |
31330946 |
atgttgttattggcattagccacatgtgttgaaattccatctgttataaaaatttgtaatctat |
31331009 |
T |
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