View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_103 (Length: 333)
Name: NF8208A_low_103
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_103 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 45684186 - 45683998
Alignment:
| Q |
3 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccat |
102 |
Q |
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| T |
45684186 |
tggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccat |
45684087 |
T |
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| Q |
103 |
cgctttgtgc-ttttgatatttttgctctcacttttgaacctatttagtcttcgcacctgcannnnnnnnggttactatttatggaatc |
190 |
Q |
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| T |
45684086 |
cgctttgtgctttttgatatttttgctctcacttttgaacctatttagtcttcgcgcctgcattttttttggttactatttatggaatc |
45683998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 45683917 - 45683800
Alignment:
| Q |
211 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
310 |
Q |
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| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
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| Q |
311 |
tgctgctgagatagttct |
328 |
Q |
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| T |
45683817 |
tgctgctgagatagttct |
45683800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 16691130 - 16691183
Alignment:
| Q |
275 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
328 |
Q |
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| T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttct |
16691183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 1443415 - 1443470
Alignment:
| Q |
273 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
328 |
Q |
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| T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttct |
1443470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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