View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_106 (Length: 330)
Name: NF8208A_low_106
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_106 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 43365640 - 43365311
Alignment:
| Q |
1 |
aatatttgattactattttcttgcagcaatttttctcaattatttgatgccgattggtttataacatccctccggaatgacataagagttgtaaggcaac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43365640 |
aatatttgattattattttcttgcagcaatttttctcaattatttgatgccgattggtttataacatccctccggaatgacataagagttgtaaagcaac |
43365541 |
T |
|
| Q |
101 |
taccaaatatgggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365540 |
taccaaatatgggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgat |
43365441 |
T |
|
| Q |
201 |
caagaaacgtgtaagtgtttcattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattg |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365440 |
caagaaacgtgtaagtgtttaattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattg |
43365341 |
T |
|
| Q |
301 |
taagttaggtgtccaacatgctagttattg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
43365340 |
taagttaggtgtccaacatgctagttattg |
43365311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University