View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_11 (Length: 477)
Name: NF8208A_low_11
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_11 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 26 - 477
Target Start/End: Original strand, 7210335 - 7210786
Alignment:
| Q |
26 |
tgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgctgatgtaaataacataggacatcgacaacactatag |
125 |
Q |
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| T |
7210335 |
tgttctatgaagcacggattctaacacggacacctaacacgacactgacaatacgtcaacttgctgatgtaaataacataggacatcgacaccactatag |
7210434 |
T |
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| Q |
126 |
aaaatgaaatcaatgctcttgaaattttatgtatccttggaaagcagctaacctgttttagtcattgttcaattcaatgttgattgatttttcaggactt |
225 |
Q |
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| T |
7210435 |
aaaatgaaatcaatgctcttaaaattttatgtatccttggaaagcagctaacctgttttagtcattgttcaattcaatgttgattgatttttcaggactt |
7210534 |
T |
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| Q |
226 |
atctcatcctttccttgccaaagcaatccaaggtctgtatgtctaaattactgaaatgtatatgatttagaaaatctgttagattgatgaccgatgtttt |
325 |
Q |
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| T |
7210535 |
atctcatcctttccttgccaaagcaatccaaggtctgtatgtctaaattactgaaatgtatatgatttagaaaatctgttagattgatgaccgatgtttt |
7210634 |
T |
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| Q |
326 |
aaaaatcgaactgaaccagtcagttcgctgactggtttaataattttttagtatttatctgtcatctggtttaaccatggtttaatcgattaaaccatga |
425 |
Q |
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| T |
7210635 |
aaaaatcgaattgaaccagtcagttcgctgactggtttaataattttttagtatttatctgtcatctggtttaaccatggtttaattgattaaaccatga |
7210734 |
T |
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| Q |
426 |
ctcagaggtctctgcggtttgatctccggtcttgtttttaaaacattgttga |
477 |
Q |
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| T |
7210735 |
ctcagaggtctctgcggttagatctccgttcttgtttttaaaacattgttga |
7210786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 121 - 333
Target Start/End: Original strand, 7196687 - 7196899
Alignment:
| Q |
121 |
tatagaaaatgaaatcaatgctcttgaaattttatgtatccttggaaagcagctaacctgttttagtcattgttcaattcaatgttgattgatttttcag |
220 |
Q |
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| T |
7196687 |
tatagagaataaaatcaatacttttgaaattttatgtttccttggaaagcagctaacccgttttagtcattgttcaattgaatgtggattgatttttcag |
7196786 |
T |
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| Q |
221 |
gacttatctcatcctttccttgccaaagcaatccaaggtctgtatgtctaaattactgaaatgtatatgatttagaaaatctgttagattgatgaccgat |
320 |
Q |
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| T |
7196787 |
gacttatctcgtcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagacaaattgttagttttatgaccgat |
7196886 |
T |
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| Q |
321 |
gttttaaaaatcg |
333 |
Q |
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| T |
7196887 |
gttttataaatcg |
7196899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 7204053 - 7204167
Alignment:
| Q |
216 |
ttcaggacttatctcatcctttccttgccaaagcaatccaaggtctgtatgtctaaattactgaaatgtatatgatttagaaaatctgttagattgatga |
315 |
Q |
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| T |
7204053 |
ttcaggacttatctcatcctctccttgccaaagcaatccaaggtttgtatgtctaaattacttaaatgtatatgatttagataatttgttagtattatga |
7204152 |
T |
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| Q |
316 |
ccgatgttttaaaaa |
330 |
Q |
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| T |
7204153 |
tcgatgtttttaaaa |
7204167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 7203980 - 7204056
Alignment:
| Q |
121 |
tatagaaaatgaaatcaatgctcttgaaattttatgtatccttggaaagc-agctaacctgttttagtcattgttca |
196 |
Q |
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| T |
7203980 |
tatagaaaatgaaatcaatgcttttaaaattttatgtttccttggaaagcaagctaacctgttttaatcattgttca |
7204056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 468
Target Start/End: Original strand, 7196912 - 7196948
Alignment:
| Q |
432 |
ggtctctgcggtttgatctccggtcttgtttttaaaa |
468 |
Q |
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| T |
7196912 |
ggtctcagcggtttgatctctggtcttgtttttaaaa |
7196948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 8160373 - 8160419
Alignment:
| Q |
29 |
tctatgaagcacggattctaacacggacacctaacacgacactgaca |
75 |
Q |
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| T |
8160373 |
tctatgatgcacggatactgacacggacaccgaacacgacactgaca |
8160419 |
T |
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