View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_111 (Length: 328)
Name: NF8208A_low_111
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_111 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 46240204 - 46239893
Alignment:
| Q |
1 |
tttgtctttagatgacagccatcagccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacc |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46240204 |
tttgtctttagatgacaaccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacc |
46240105 |
T |
|
| Q |
101 |
tgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240104 |
tgggttgtaatcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagta |
46240005 |
T |
|
| Q |
201 |
ttgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240004 |
ttgacaatcagcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtca |
46239905 |
T |
|
| Q |
301 |
tccatgatgtcc |
312 |
Q |
| |
|
|||||||||||| |
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|
| T |
46239904 |
tccatgatgtcc |
46239893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 23541598 - 23541295
Alignment:
| Q |
1 |
tttgtctttagatgacagccatcagccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacc |
100 |
Q |
| |
|
|||||||||| |||||| ||||| |||||| |||||| ||||| ||||| | || ||||| || |||||||||||||||||||| ||||| ||||||| |
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|
| T |
23541598 |
tttgtctttaaatgacatccatctaccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacc |
23541499 |
T |
|
| Q |
101 |
tgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagta |
200 |
Q |
| |
|
||||||| | | ||| ||| ||||| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | || |
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|
| T |
23541498 |
tgggttggattgatggggttggtctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcata |
23541399 |
T |
|
| Q |
201 |
ttgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtca |
300 |
Q |
| |
|
||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| |||||||| | || |||||||||||||| || |||||||||||| |
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|
| T |
23541398 |
ttgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctacccattgtaatacccactgcatggtttgtcctcatgtca |
23541299 |
T |
|
| Q |
301 |
tcca |
304 |
Q |
| |
|
|||| |
|
|
| T |
23541298 |
tcca |
23541295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 3437275 - 3437574
Alignment:
| Q |
1 |
tttgtctttagatgacagccatcagccccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3437275 |
tttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaacc |
3437374 |
T |
|
| Q |
101 |
tgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3437375 |
tgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagta |
3437474 |
T |
|
| Q |
201 |
ttgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3437475 |
ttgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc------------tacccactgcatgattcgtcctcatgtca |
3437562 |
T |
|
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