View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_114 (Length: 325)

Name: NF8208A_low_114
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_114
NF8208A_low_114
[»] chr6 (3 HSPs)
chr6 (109-325)||(24075905-24076118)
chr6 (1-58)||(24076173-24076230)
chr6 (158-188)||(5942532-5942562)
[»] chr7 (1 HSPs)
chr7 (62-118)||(24767799-24767855)
[»] chr8 (1 HSPs)
chr8 (62-118)||(42293485-42293541)
[»] chr3 (2 HSPs)
chr3 (59-118)||(48126877-48126936)
chr3 (160-194)||(55070189-55070223)
[»] chr4 (1 HSPs)
chr4 (62-100)||(1662454-1662492)
[»] chr1 (1 HSPs)
chr1 (64-121)||(32085534-32085591)
[»] chr2 (1 HSPs)
chr2 (62-112)||(4816414-4816464)
[»] scaffold0111 (1 HSPs)
scaffold0111 (112-145)||(37407-37440)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 109 - 325
Target Start/End: Complemental strand, 24076118 - 24075905
Alignment:
Q  109 tagtagctaagaattcacatttaaggtgaataagtgggatgttcaaacttctgtatatattatgcaatgtctctatcaacagagtttggtaaagaggttt 208  Q
    |||||||||| |||||||||||||| ||||||||||||||||| |||   |  |||||||||||||||||| |||||||||||| |||||| ||||||||    
T  24076118 tagtagctaaaaattcacatttaagatgaataagtgggatgtttaaa---ccctatatattatgcaatgtccctatcaacagagcttggtagagaggttt 24076022  T
Q  209 gatgattatcaatgaattgcaacaatacgacaatagactctattaatatatgtgttcaaggcactaaagcagcattgtgattacactgaagcataaaaca 308  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  24076021 gatgattatcaatgaattgcaacaatacgacaataaactctattaatatatgtgttcaaggcactaaagcaacattgtgattgcactgaagcataaaaca 24075922  T
Q  309 cctttatgttcatttga 325  Q
    |||||||||||||||||    
T  24075921 cctttatgttcatttga 24075905  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24076173 - 24076230
Alignment:
Q  1 gtaatgtaattttctagttctccttttagtttacattgctcgatttcttcttttatat 58  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24076173 gtaatgtaattttctagttctcctttttgtttacattgctcgatttcttcttttatat 24076230  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 5942532 - 5942562
Alignment:
Q  158 tctgtatatattatgcaatgtctctatcaac 188  Q
    |||||||||||||||||||||||||||||||    
T  5942532 tctgtatatattatgcaatgtctctatcaac 5942562  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 24767855 - 24767799
Alignment:
Q  62 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagtagctaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  24767855 actagactggtgacccgtgcgtcgcacgggtcttattagacgaaatatagttgctaa 24767799  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 42293541 - 42293485
Alignment:
Q  62 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagtagctaa 118  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  42293541 actagattggtgacccgtgcgccgcacgggtcttatgagccgaaatatagttgctaa 42293485  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 48126877 - 48126936
Alignment:
Q  59 tggactagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagtagctaa 118  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  48126877 tggattagattggtgacccgtacgtcgcacgagtcttattagccgaaatatagttgctaa 48126936  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 55070189 - 55070223
Alignment:
Q  160 tgtatatattatgcaatgtctctatcaacagagtt 194  Q
    ||||||||||||||||||| |||||||||||||||    
T  55070189 tgtatatattatgcaatgtatctatcaacagagtt 55070223  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 1662454 - 1662492
Alignment:
Q  62 actagactggtgacccgtgcgtcgcacgggtcttattag 100  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1662454 actagactggtgacccgtgcgtcgcacgggtcttattag 1662492  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 32085591 - 32085534
Alignment:
Q  64 tagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagtagctaagaa 121  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| || ||||||||    
T  32085591 tagattggtgacccgtgcgttgcacgcgtcttattagccgaaatattgttgctaagaa 32085534  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 4816464 - 4816414
Alignment:
Q  62 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagt 112  Q
    |||||| ||||||||||| |||||||| ||||||||||| |||||||||||    
T  4816464 actagattggtgacccgttcgtcgcacaggtcttattagacgaaatatagt 4816414  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 37440 - 37407
Alignment:
Q  112 tagctaagaattcacatttaaggtgaataagtgg 145  Q
    ||||||| ||||||||||||||||||||||||||    
T  37440 tagctaaaaattcacatttaaggtgaataagtgg 37407  T

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