View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_116 (Length: 320)

Name: NF8208A_low_116
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_116
NF8208A_low_116
[»] chr4 (9 HSPs)
chr4 (94-221)||(9605370-9605495)
chr4 (27-115)||(9580693-9580781)
chr4 (27-115)||(9586388-9586476)
chr4 (236-320)||(9601715-9601794)
chr4 (220-284)||(9574396-9574460)
chr4 (137-177)||(9592447-9592487)
chr4 (229-293)||(9592954-9593018)
chr4 (134-198)||(55781409-55781473)
chr4 (134-198)||(55845589-55845653)
[»] scaffold0110 (1 HSPs)
scaffold0110 (46-114)||(41406-41474)
[»] chr6 (3 HSPs)
chr6 (137-221)||(29142179-29142263)
chr6 (46-115)||(30036297-30036366)
chr6 (46-115)||(30152033-30152102)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 9605370 - 9605495
Alignment:
Q  94 ccattgatattgttaatgataacggatgatcatgtatatggactatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttatta 193  Q
    ||||||||||||||||||||||  |||||||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  9605370 ccattgatattgttaatgataagagatgatcatgtat--ggattatttaacaatcaagaaggttcattatagttaatacctattcaatcttactttatta 9605467  T
Q  194 tccaatgctaattaagctgttatgatgg 221  Q
    ||||||||||||||||||||||||||||    
T  9605468 tccaatgctaattaagctgttatgatgg 9605495  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 9580693 - 9580781
Alignment:
Q  27 taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa 115  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||  |||||||||||| |||||| |||||||||||||    
T  9580693 taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa 9580781  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 9586388 - 9586476
Alignment:
Q  27 taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa 115  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||  |||||||||||| |||||| |||||||||||||    
T  9586388 taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa 9586476  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 9601715 - 9601794
Alignment:
Q  236 agtttatgaatcaggcaactcggtaaagcaactacaccgtaaataagaagtaatactcgtttcatctaacaacagtttgtgggga 320  Q
    ||||||||||||| |||||| ||||||| ||||||| |||||||||||||||||||     ||||||||||||||||||||||||    
T  9601715 agtttatgaatcaagcaacttggtaaagaaactacaacgtaaataagaagtaatac-----tcatctaacaacagtttgtgggga 9601794  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 9574460 - 9574396
Alignment:
Q  220 ggacaagtacaaattcagtttatgaatcaggcaactcggtaaagcaactacaccgtaaataagaa 284  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | ||||||||||    
T  9574460 ggacaagtacaaattcagtttatgaatcaagcaactcggtaaagaaaccacaacataaataagaa 9574396  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 9592447 - 9592487
Alignment:
Q  137 tatttaacaatcaagaaggtccgttatagttaatacctatt 177  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  9592447 tatttaacaatcaagaaagtccattatagtttatacctatt 9592487  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 9592954 - 9593018
Alignment:
Q  229 caaattcagtttatgaatcaggcaactcggtaaagcaactacaccgtaaataagaagtaatactc 293  Q
    |||||||||| || |||||| ||||||| |||||| ||| |||   |||||||||||||||||||    
T  9592954 caaattcagtctacgaatcaagcaactccgtaaagaaaccacaatataaataagaagtaatactc 9593018  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 55781409 - 55781473
Alignment:
Q  134 gactatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttattatccaa 198  Q
    ||||||||| |||||| |||||| | || ||||| || | ||||||||| |||||||||||||||    
T  55781409 gactatttaccaatcatgaaggtgcattgtagtttatgcttattcaatcatactttattatccaa 55781473  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 55845589 - 55845653
Alignment:
Q  134 gactatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttattatccaa 198  Q
    ||||||||| |||||| |||||| | || ||||| || | ||||||||| |||||||||||||||    
T  55845589 gactatttaccaatcatgaaggtgcattgtagtttatgcttattcaatcatactttattatccaa 55845653  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 41474 - 41406
Alignment:
Q  46 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgata 114  Q
    ||||||||||||||||||| ||||||| || ||||| |||||||||||| |||| | ||||||||||||    
T  41474 aagctgattgcaatttgcacagagaaataacctgaagtgaagtgaatccaattggtgttgttaatgata 41406  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 29142263 - 29142179
Alignment:
Q  137 tatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttattatccaatgctaattaagctgttatgatgg 221  Q
    ||||||||||||| |||| | | |||| ||| || | ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  29142263 tatttaacaatcatgaagctgcattattgtttatgcttattctatcttacattattatccaatgcaaattaagctgttatgatgg 29142179  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 30036297 - 30036366
Alignment:
Q  46 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa 115  Q
    ||||||||||||||||||| ||||||| || ||||| | || ||||||| |||| | || ||||||||||    
T  30036297 aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa 30036366  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 30152033 - 30152102
Alignment:
Q  46 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa 115  Q
    ||||||||||||||||||| ||||||| || ||||| | || ||||||| |||| | || ||||||||||    
T  30152033 aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa 30152102  T

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