View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_120 (Length: 315)
Name: NF8208A_low_120
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_120 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 43365573 - 43365887
Alignment:
| Q |
1 |
gatgttataaaacaatcggcatcgaataattgagtaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtg |
100 |
Q |
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| T |
43365573 |
gatgttataaaccaatcggcatcaaataattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtg |
43365672 |
T |
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| Q |
101 |
ttctgctaccaaagaaaatattatatgtgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaaga |
200 |
Q |
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| T |
43365673 |
ttctgctaccaaagaaaatattatatgtgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaaga |
43365772 |
T |
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| Q |
201 |
tgtatgatccaatgctggaataacaagagtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaa |
300 |
Q |
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| T |
43365773 |
tgtatgatccaatgctggaataacaagagtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtattttttcaa |
43365872 |
T |
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| Q |
301 |
taccagaaatattgc |
315 |
Q |
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| T |
43365873 |
taccagaaatattgc |
43365887 |
T |
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