View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_121 (Length: 315)
Name: NF8208A_low_121
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_121 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 18515489 - 18515788
Alignment:
| Q |
10 |
aatatcactgtagttcttgtagttgaatcggtagtagtaaggaagatcatcgtgggtaaggttcgacgaagacttcttcatctcttgcagcaaacgagaa |
109 |
Q |
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| T |
18515489 |
aatatcactgtagttcttgtagttgaatcggtagtagtaaggaagatcatcgtgggtaaggttcgacgaagacttcttcatctcttgcagcaaacgagaa |
18515588 |
T |
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| Q |
110 |
atgggtactgctctacaatctccggaaccttcagacttgtcagagagaaatgcgagatgtggtttctttgttcgcttcttcttcttaagatgcgttttgg |
209 |
Q |
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| T |
18515589 |
atgggtactgctctacaatctccggaaccttcagacttgtcagagagaaatgcgagatgtggtttctttgttcgcttcttcttcttaagatgcgttttgg |
18515688 |
T |
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| Q |
210 |
caaagattggatcagagatgatggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataac |
309 |
Q |
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| T |
18515689 |
caaagattggatcagagatgatggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataac |
18515788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 15572630 - 15572680
Alignment:
| Q |
100 |
caaacgagaaatgggtactgctctacaatctccggaaccttcagacttgtc |
150 |
Q |
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| T |
15572630 |
caaacgagaggtcggtactgccctacaatctccggaaccttcagacttgtc |
15572680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 9807082 - 9807026
Alignment:
| Q |
216 |
ttggatcagagatgatggtgttccaggacttacacacgcacttcattcgtatcagat |
272 |
Q |
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| T |
9807082 |
ttggatcagagattagggagttccaagacttactcacacacttcatccgtatcagat |
9807026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 14514279 - 14513998
Alignment:
| Q |
26 |
ttgtagttgaatcggtagtagtaaggaagatcatcgtgggtaaggttcgacgaagacttcttcatctcttgcagcaaacgagaaatgggtactgctctac |
125 |
Q |
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| T |
14514279 |
ttgtacttgaatcggttgtggtaaggaagatcgtcatcggttagggatgatgaaaacgtattcatctcttgcagcaaacgagagatgggtacagctctac |
14514180 |
T |
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| Q |
126 |
aatctccggaaccttcagacttgtcagagagaaatgcgagatgtggtttctttgttcgcttcttcttcttaagatgcgttttggcaaagattggatcaga |
225 |
Q |
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| T |
14514179 |
aatctccggaacctttggacttgtcagagagaagtgtgaggtgttgcttcttctt---cttcttcttcttaagatgcattttggcgaagattggatcaga |
14514083 |
T |
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| Q |
226 |
gatgatggtgttccaggacttacacacgcacttcattcgtatcagatctttcacttcaagaaacgtcaggaattcgatgataact |
310 |
Q |
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| T |
14514082 |
gatgacggtgttccaggacttacacacgcacttcatccacatcagatctttcacttcaagaaatgagaggaattcaaagataact |
14513998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 6922061 - 6922109
Alignment:
| Q |
97 |
cagcaaacgagaaatgggtactgctctacaatctccggaaccttcagac |
145 |
Q |
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| T |
6922061 |
cagcaaacgagagatgggcactgccctacattctcccgaaccttcagac |
6922109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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