View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_129 (Length: 311)
Name: NF8208A_low_129
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_129 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 40639528 - 40639838
Alignment:
| Q |
1 |
gcttcggatactgtgtttactcgcagactcttacatgggacatactatggtttgcgaatctcaaagctttcctaagcttcatgcgttaaaattttgggtg |
100 |
Q |
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| T |
40639528 |
gcttcggatactgtgtttactcgcagactcttacatgggacatactatggtttgcgaatctcaaagctttcctaagcttcatgcgttaaaattttgggtg |
40639627 |
T |
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| Q |
101 |
ctgaagcaattagaggaatggaaaatagagcaaggagcacttccctgtctgagacaactggaaatcagatcgtgtccgaacctgaaaatgcttcctaatg |
200 |
Q |
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| T |
40639628 |
ctgaagcaattagaggaatggaaaatagagcaaggagcacttccctgtctgagacaactggaaatcagattgtgtccaaacctgaaaatgcttcctaatg |
40639727 |
T |
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| Q |
201 |
gactaaagcatgtcaacactctgctagaattgaagttaacagacatgccaagggaaatcaatgatgaggcgcagaacatcccaacattcctacccaattg |
300 |
Q |
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| T |
40639728 |
gactaaagcatgtcaacactctgctagaattgaagttaacagacatgccaagggaaatcaatgatgaggcgcagaacatcccaacattcctacccaattg |
40639827 |
T |
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| Q |
301 |
tcaagtcgtct |
311 |
Q |
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| T |
40639828 |
tcgagtcgtct |
40639838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 40660302 - 40660577
Alignment:
| Q |
10 |
actgtgtttactcgcagactcttacatggg-acatactatggtttgcgaatctcaaagctttcctaagcttcatgcgttaaaattttgggtgctgaagca |
108 |
Q |
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| T |
40660302 |
actgtgtttactcgcagagtcatacgtgggcaca-actgtggtttgcgaatctcaaagctttcctcagcttcatgtcttaaaattttggaagctgcagca |
40660400 |
T |
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| Q |
109 |
attagaggaatggaaaatagagcaaggagcacttccctgtctgagacaactggaaatcagatcgtgtccgaacctgaaaatgcttcctaatggactaaag |
208 |
Q |
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| T |
40660401 |
tttggaggaaattaagatagatccaggagcactcccatgtctaagacaactggaaatcagatcgtgtccaaacatgcaaatgcttcctgatggactaaag |
40660500 |
T |
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| Q |
209 |
catgtcaacactctgctagaattgaagttaacagacatgccaagggaaatcaatgatgaggcgcagaacatcccaac |
285 |
Q |
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| T |
40660501 |
catgtcaacactctgcttgaattgaagttaacaaacatgccaatgaaaatcaatgttgaggcgcataacatcccaac |
40660577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 2 - 283
Target Start/End: Complemental strand, 40625765 - 40625484
Alignment:
| Q |
2 |
cttcggatactgtgtttactcgcagactcttacatgggacatactatggtttgcgaatctcaaagctttcctaagcttcatgcgttaaaattttgggtgc |
101 |
Q |
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| T |
40625765 |
cttcggatactatctctgctggcagactcttacataggacaaaccatgttttgccaatctcaaatctttcctcagcttcatgtattaaaattttggaatc |
40625666 |
T |
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| Q |
102 |
tgaagcaattagaggaatggaaaatagagcaaggagcacttccctgtctgagacaactggaaatcagatcgtgtccgaacctgaaaatgcttcctaatgg |
201 |
Q |
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| T |
40625665 |
tgcagcattttgatgaatggactatagagccaggagcactcccgtgtctcagacaactcgaaatcagatcatgtcctcacctaataatgcttcctgacgg |
40625566 |
T |
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| Q |
202 |
actaaagcatgtcaacactctgctagaattgaagttaacagacatgccaagggaaatcaatgatgaggcgcagaacatccca |
283 |
Q |
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| T |
40625565 |
actaaagcatgtcaacactctgcttgagttgaagttaacaaacatgccaatggatatcaatgctgaggcgcataacatccca |
40625484 |
T |
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