View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_13 (Length: 470)
Name: NF8208A_low_13
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 202 - 464
Target Start/End: Original strand, 29583921 - 29584183
Alignment:
| Q |
202 |
aaagctgtagttaatcagcgtagcaaattcataagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagtt |
301 |
Q |
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| T |
29583921 |
aaagctgtagttaatcaacgtagcaaattcagaagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagtt |
29584020 |
T |
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| Q |
302 |
caagtgatgttgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattattt |
401 |
Q |
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| T |
29584021 |
caagtgatattgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattattt |
29584120 |
T |
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| Q |
402 |
gttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
464 |
Q |
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| T |
29584121 |
gttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
29584183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 29583618 - 29583810
Alignment:
| Q |
1 |
atagaaagagtgtacatccctttttgcgaatgagttgagtgagtatcactataaacctagagatgccaaggatggaaaatctggagcataatccaagtgt |
100 |
Q |
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| T |
29583618 |
atagaaagagtgtacatccctttttgcgaatgagttgagtgagtatcactataaacctagagatgccaaggatggaaaatctggagcataatccaagtgt |
29583717 |
T |
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| Q |
101 |
cattacgaatgaactctaatattatcttaaattttggtttggacctaactcaacctcacaatatcggtttgtaaggtaagggatatttctcac |
193 |
Q |
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| T |
29583718 |
cattacgaatgaactctaatattatcttaaattttggtttggacctaactcaacctcacaatatcggtttgtaaggtaagggatatttctcac |
29583810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 29610729 - 29610626
Alignment:
| Q |
247 |
tgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatctc |
346 |
Q |
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|||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| |
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| T |
29610729 |
tgccttacagatacactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctc |
29610630 |
T |
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| Q |
347 |
taca |
350 |
Q |
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|||| |
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| T |
29610629 |
taca |
29610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 25128780 - 25128882
Alignment:
| Q |
246 |
atgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatct |
345 |
Q |
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||||||||| || |||||||||||| | |||||||| |||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
25128780 |
atgccttaccgcgacacaaggagcaaagttatagtgaattccgcttgctttaacttcaagcgccgttgcagctccaattcttctaactaaatcagcatct |
25128879 |
T |
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| Q |
346 |
cta |
348 |
Q |
| |
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||| |
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| T |
25128880 |
cta |
25128882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 19809943 - 19809995
Alignment:
| Q |
125 |
tcttaaattttggtttggacctaactcaacctcacaatatcggtttgtaaggt |
177 |
Q |
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||||||||||||| |||| ||||||||||||| |||| ||||| ||||||||| |
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| T |
19809943 |
tcttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggt |
19809995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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