View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_132 (Length: 309)
Name: NF8208A_low_132
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_132 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 36125235 - 36125516
Alignment:
| Q |
8 |
aaacagagatgaagatttgaacttcgttacgaacgaaatggttgagtttgatttgcaggacttgttaagggcctcagctgaggttttgggaagtggaagt |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36125235 |
aaacaaagatgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagggcctcagcagaggttttgggaagtggaagt |
36125334 |
T |
|
| Q |
108 |
tttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36125335 |
tttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatc |
36125434 |
T |
|
| Q |
208 |
atatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36125435 |
atatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
36125516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 286
Target Start/End: Original strand, 42509247 - 42509377
Alignment:
| Q |
156 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
255 |
Q |
| |
|
||||| || |||||||| |||||||| || || || ||||||| | || |||||||||||| |||||||||||| ||||||||| | | ||||| | |
|
|
| T |
42509247 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
42509346 |
T |
|
| Q |
256 |
ttgcattctattatggaaaagatgagaagct |
286 |
Q |
| |
|
|||| | ||||||| ||||||| |||||||| |
|
|
| T |
42509347 |
ttgcttactattatagaaaagaagagaagct |
42509377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 1254857 - 1255047
Alignment:
| Q |
75 |
agggcctcagctgaggttttgggaagtggaagttttggatccacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcaca |
174 |
Q |
| |
|
||||| |||||||| || | |||||||||||||||||||| ||||| ||||| || || |||| |||||| ||| || || || ||||||| ||||| |
|
|
| T |
1254857 |
agggcttcagctgaagtgcttggaagtggaagttttggatcaacttataaggcaatagttttgaatggaccaactgtggtggttaagagatttaggcaca |
1254956 |
T |
|
| Q |
175 |
tgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattcta |
265 |
Q |
| |
|
|||| || ||||| ||| ||||||| | ||| || |||| || ||||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
1254957 |
tgaataatgttggtaaacaagagttttttgaacacatgaaaaagcttggaagtttgacacatcctaatctacttcctcttattgcattcta |
1255047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University