View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_137 (Length: 306)
Name: NF8208A_low_137
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_137 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 45859057 - 45858795
Alignment:
| Q |
30 |
atgactgtatgttttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| |||||||||||| ||||||||| |
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| T |
45859057 |
atgactgtatgttttaaatttatttaagaaaaatctattttccatgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtc |
45858962 |
T |
|
| Q |
130 |
ttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggtta |
229 |
Q |
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|||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
45858961 |
ctgtcactaggtagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggcta |
45858862 |
T |
|
| Q |
230 |
tctcgtgctattgctatagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaa |
296 |
Q |
| |
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|| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |||| |
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| T |
45858861 |
tcacgtgctattgctatagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaa |
45858795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 45876988 - 45876731
Alignment:
| Q |
24 |
agatcaatgactgtatgttttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagct |
123 |
Q |
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|||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||||| || ||| |||| |||||||| |||| |
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| T |
45876988 |
agatcaatgactgtatgttttaaattcatacaagaaaaagctattttc--tgttttctgttcttcccccttctatgtcca----atagttac----agct |
45876899 |
T |
|
| Q |
124 |
actgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggt |
223 |
Q |
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||| || ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
45876898 |
actatcccgtcgctaggtagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggt |
45876799 |
T |
|
| Q |
224 |
gggttatctcgtgctattgctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt |
291 |
Q |
| |
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||| |||||||||||||||||||||| ||| |||| || |||||||||||||||| ||||||||||| |
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| T |
45876798 |
gggctatctcgtgctattgctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt |
45876731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
| Q |
147 |
agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat |
246 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
56208670 |
agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat |
56208571 |
T |
|
| Q |
247 |
agccaaactgaaggccgatatacctcaagaca |
278 |
Q |
| |
|
||| ||| ||||||| | |||||||||||||| |
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| T |
56208570 |
agcaaaattgaaggctggtatacctcaagaca |
56208539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
| Q |
141 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
47293456 |
tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat |
47293555 |
T |
|
| Q |
241 |
tgctatagccaaactgaaggccgatatacctcaagacagtcaggt |
285 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| |||| ||||| |
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| T |
47293556 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt |
47293600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
| Q |
141 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
240 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
55705881 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
55705980 |
T |
|
| Q |
241 |
tgctatagccaaactgaaggccgatatacctcaagacag |
279 |
Q |
| |
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|||||| | ||| |||| || ||||||||||| |||| |
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| T |
55705981 |
tgctattacaaaattgaaagctaatatacctcaaaacag |
55706019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
| Q |
166 |
ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat |
265 |
Q |
| |
|
||||| ||||||||| |||||||| ||| ||||| |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| || |
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| T |
54304249 |
ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat |
54304348 |
T |
|
| Q |
266 |
atacctcaa |
274 |
Q |
| |
|
||||||||| |
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| T |
54304349 |
atacctcaa |
54304357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 141 - 286
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
| Q |
141 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
240 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
35854542 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
35854641 |
T |
|
| Q |
241 |
tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt |
286 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||| |||| |||||| |
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|
| T |
35854642 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt |
35854687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
| Q |
141 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct |
217 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
35802580 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
| Q |
143 |
gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg |
242 |
Q |
| |
|
||||||||| || || || |||| ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
243 |
ctatagccaaactgaaggccgatatacctcaa |
274 |
Q |
| |
|
|||| || ||| | |||||| ||||||||||| |
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|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctcaa |
10521434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
| Q |
136 |
ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt |
235 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||||| | || || |
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|
| T |
24357450 |
ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga |
24357549 |
T |
|
| Q |
236 |
gctattgctatagccaaactgaaggccgatatacctcaagac |
277 |
Q |
| |
|
|||||||| ||||| ||| |||||||| |||||||||||||| |
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|
| T |
24357550 |
gctattgccatagcaaaattgaaggccaatatacctcaagac |
24357591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
| Q |
140 |
gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta |
239 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| |||||||| |||| |||| ||||||| |
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|
| T |
7972222 |
gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta |
7972123 |
T |
|
| Q |
240 |
ttgctatagccaaactgaaggccgatatacctcaagacag |
279 |
Q |
| |
|
|||||||||| ||| |||||||| || | |||||| |||| |
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|
| T |
7972122 |
ttgctatagcaaaattgaaggccaatcttcctcaaaacag |
7972083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 274
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
| Q |
141 |
tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat |
240 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||| ||||| |||||| ||||| ||| |||||| |||||||||||||| |||| | ||||| |
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|
| T |
7961851 |
tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat |
7961752 |
T |
|
| Q |
241 |
tgctatagccaaactgaaggccgatatacctcaa |
274 |
Q |
| |
|
||||||||| ||| |||||||| |||| |||||| |
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|
| T |
7961751 |
tgctatagcaaaattgaaggccaatattcctcaa |
7961718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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