View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_138 (Length: 305)
Name: NF8208A_low_138
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_138 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 42709102 - 42709373
Alignment:
| Q |
6 |
agaatcatagaggagaagattgctataatgagagagaaacacaggtcctttcttctctataacccatgtcattaagtaaaatgcgacccctgtggctata |
105 |
Q |
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| T |
42709102 |
agaattatagaggagaagattgtaataatcagaaagaaacacagatcctttcttctctataacccatgtcattaagtaaagtgcgacccctgtggctata |
42709201 |
T |
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| Q |
106 |
aattccctaccagtgcaaattgagaggattacacaataggctatatcgaggaaggtgacgttccaacccaatttccagtgctgaatgtcccttgctatgg |
205 |
Q |
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| T |
42709202 |
aattccctaccagcacaaattgagaggattacacaataggctatagcgaggaaggtgacgttccaacccaatttccagtgctgaatgtccctttctatgg |
42709301 |
T |
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| Q |
206 |
cgaaggcaacagctaaagactgaattgagcttaagaaacattggagagtcgtaaagattaactttgaagggt |
277 |
Q |
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| T |
42709302 |
cgaaggcaacagctaaagactgaattgagcttaataaacattggagagtcgtaaagattaactttgaagggt |
42709373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 126 - 281
Target Start/End: Complemental strand, 43623449 - 43623294
Alignment:
| Q |
126 |
tgagaggattacacaataggctatatcgaggaaggtgacgttccaacccaatttccagtgctgaatgtcccttgctatggcgaaggcaacagctaaagac |
225 |
Q |
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| T |
43623449 |
tgagaggtttacacaataggctatagcgaggaggctgacgttccaacccaatttccactgctcaatgtccctttctatggccaaggcaatagctaaagat |
43623350 |
T |
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| Q |
226 |
tgaattgagcttaagaaacattggagagtcgtaaagattaactttgaagggtagtc |
281 |
Q |
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| T |
43623349 |
tgaattgagcttaagaaacattggagagtcgtaaagctcaactttgaagggtagtc |
43623294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 43623603 - 43623545
Alignment:
| Q |
40 |
agaaacacaggtcctttcttctctataacccatgtcattaagtaaaatgcgacccctgt |
98 |
Q |
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| T |
43623603 |
agaaacacaggccctttcttctctatgacccatgtcattaagtaatatccgacccctgt |
43623545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 38765786 - 38765750
Alignment:
| Q |
218 |
ctaaagactgaattgagcttaagaaacattggagagt |
254 |
Q |
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| T |
38765786 |
ctaaagactgaattgagcttaagaaacattgaagagt |
38765750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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