View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_139 (Length: 305)
Name: NF8208A_low_139
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 11365124 - 11365417
Alignment:
| Q |
1 |
atattggttgagttatgtgcatttggaactagtaaatatttctagggaggcatatattactttatactttataatcttacaaaatcataatactcttagc |
100 |
Q |
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| T |
11365124 |
atattggttgagttatgtgcatttggaactagtaaatatttctagggaggcatatattactttatactttataatcttacaaaatcataatactcttagc |
11365223 |
T |
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| Q |
101 |
tgggtatgagtagcttggtagatatgattaaattttgaaactatggtatgtcactttcggtcttgtgaaacgtctcaagactctagctacatattctata |
200 |
Q |
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| T |
11365224 |
tgggtataagtagcttggtagatatgattaaattttgaaactatggtatgtcactttcggtcttgtgaaacgtctcaagactctagctacatattctata |
11365323 |
T |
|
| Q |
201 |
ttttccaccgtgatttagggagcccattatttatatattgatgttgcattcaatttatttctaaggctt-tctctaatctaatagggggatatt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11365324 |
ttttccaccgtgatttagggagcccattatttatatattgatgttgcattcaatttatttctaaggcttctctctaatctaatagggggatatt |
11365417 |
T |
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