View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_144 (Length: 299)

Name: NF8208A_low_144
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_144
NF8208A_low_144
[»] chr1 (10 HSPs)
chr1 (81-199)||(31771310-31771428)
chr1 (81-203)||(7608318-7608440)
chr1 (135-228)||(7608224-7608317)
chr1 (135-228)||(31771212-31771305)
chr1 (223-281)||(7608097-7608155)
chr1 (223-279)||(31771087-31771143)
chr1 (81-138)||(1721556-1721613)
chr1 (71-115)||(17726023-17726066)
chr1 (80-115)||(32440669-32440704)
chr1 (80-111)||(22368223-22368254)
[»] scaffold0152 (1 HSPs)
scaffold0152 (81-177)||(10195-10291)
[»] chr3 (10 HSPs)
chr3 (76-155)||(19766009-19766088)
chr3 (13-68)||(11427105-11427160)
chr3 (70-115)||(11394007-11394052)
chr3 (226-266)||(31688056-31688096)
chr3 (92-177)||(31687881-31687966)
chr3 (81-115)||(46233983-46234017)
chr3 (226-266)||(31896771-31896811)
chr3 (226-266)||(31912480-31912520)
chr3 (226-266)||(31946128-31946168)
chr3 (75-115)||(52130783-52130823)
[»] chr2 (5 HSPs)
chr2 (67-138)||(997806-997877)
chr2 (80-115)||(4453777-4453812)
chr2 (76-115)||(7161811-7161850)
chr2 (80-115)||(9208569-9208604)
chr2 (71-115)||(3625169-3625215)
[»] chr6 (3 HSPs)
chr6 (70-115)||(31444760-31444805)
chr6 (76-116)||(27444122-27444162)
chr6 (75-111)||(33054187-33054223)
[»] chr4 (5 HSPs)
chr4 (71-115)||(32651290-32651334)
chr4 (71-155)||(38467690-38467775)
chr4 (73-115)||(41810163-41810205)
chr4 (83-155)||(3649873-3649945)
chr4 (81-116)||(26720237-26720272)
[»] scaffold0003 (3 HSPs)
scaffold0003 (81-177)||(36966-37062)
scaffold0003 (76-116)||(43199-43239)
scaffold0003 (226-265)||(36837-36876)
[»] scaffold0014 (1 HSPs)
scaffold0014 (74-116)||(32608-32650)
[»] chr7 (2 HSPs)
chr7 (76-111)||(16262706-16262741)
chr7 (81-115)||(21820194-21820228)
[»] chr8 (2 HSPs)
chr8 (81-115)||(44663703-44663737)
chr8 (81-155)||(35348991-35349066)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 180  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  181 tgtttgccattttttcctc 199  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 180  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  181 tgtttgccattttttcctccttt 203  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  135 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 228  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  135 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 228  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 7608155 - 7608097
Alignment:
Q  223 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctccttgctctcc 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctcc 7608097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 31771143 - 31771087
Alignment:
Q  223 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctccttgctct 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctct 31771087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattct 138  Q
    |||||||||||||||||||||| ||||||||||||  ||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 17726023 - 17726066
Alignment:
Q  71 atctaatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaa 17726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 32440704 - 32440669
Alignment:
Q  80 aatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||||||||||||||||||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaa 32440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 22368254 - 22368223
Alignment:
Q  80 aatctaacttattcctaatcctagttaacact 111  Q
    ||||||||||||||||||||||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacact 22368223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 177  Q
    |||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  76 atctaatctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgccaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 11427160 - 11427105
Alignment:
Q  13 acatcattttcatagtatcaagatgcaaaactaattacgttttgcaatcaggtaat 68  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  11427160 acatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 11394007 - 11394052
Alignment:
Q  70 tatctaatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaa 11394052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  226 attgtaaatgacaaataattaatgttattggtttccaataa 266  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  92 tcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 177  Q
    ||||| ||||||||||||||||||   ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 46234017 - 46233983
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||||||||||||||||||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaa 46233983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  226 attgtaaatgacaaataattaatgttattggtttccaataa 266  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  226 attgtaaatgacaaataattaatgttattggtttccaataa 266  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 31946168 - 31946128
Alignment:
Q  226 attgtaaatgacaaataattaatgttattggtttccaataa 266  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  31946168 attgtaaatgacaaataatgaatgttatcgatttccaataa 31946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 52130783 - 52130823
Alignment:
Q  75 aatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaa 52130823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  67 atctatctaatctaatctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattct 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||  | | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 4453777 - 4453812
Alignment:
Q  80 aatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||||||||||||||||||||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaa 4453812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  76 atctaatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 9208569 - 9208604
Alignment:
Q  80 aatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||||||||||||||||||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaa 9208604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 3625169 - 3625215
Alignment:
Q  71 atctaatctaa--tctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaa 3625215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  70 tatctaatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  76 atctaatctaacttattcctaatcctagttaacactccaaa 116  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 33054223 - 33054187
Alignment:
Q  75 aatctaatctaacttattcctaatcctagttaacact 111  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacact 33054187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 32651334 - 32651290
Alignment:
Q  71 atctaatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaa 32651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  71 atctaatctaatctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattct-cctattttaggtgccaa 155  Q
    ||||||||||||||||||||||  |||||||||||||||||||||  ||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 41810163 - 41810205
Alignment:
Q  73 ctaatctaatctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaa 41810205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  83 ctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgccaa 155  Q
    |||||||||||||||||||||||||||||||||  ||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaa 116  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 177  Q
    |||||||||||||||||||||| ||||||||||||  |||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  76 atctaatctaacttattcctaatcctagttaacactccaaa 116  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  226 attgtaaatgacaaataattaatgttattggtttccaata 265  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  74 taatctaatctaacttattcctaatcctagttaacactccaaa 116  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 16262741 - 16262706
Alignment:
Q  76 atctaatctaacttattcctaatcctagttaacact 111  Q
    ||||||||||||||||||||||||||||||||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacact 16262706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 21820228 - 21820194
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||||||||| ||||||||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaa 21820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 44663737 - 44663703
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaa 115  Q
    |||||||||||||||||||||||||||||||||||    
T  44663737 atctaacttattcctaatcctagttaacactccaa 44663703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  81 atctaacttattcctaatcctagttaacactccaaaaaacactcccaaccctaattct-cctattttaggtgccaa 155  Q
    |||||||||||| ||||||||||||||||||||||  ||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University