View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_156 (Length: 291)
Name: NF8208A_low_156
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_156 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 43001099 - 43001378
Alignment:
| Q |
12 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
111 |
Q |
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| T |
43001099 |
tggacatcagaagagaaagaactattcttggagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
43001198 |
T |
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| Q |
112 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaagctgaagaggaaagatgttggtaagctagggaagtcatatgcagctaaaac |
211 |
Q |
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| T |
43001199 |
actgcattgagttctactacaagaatcacaaatccgaatgttttgagaaactgaagaggaaagatattggtaagctagggaagtcatatgcagctaaaac |
43001298 |
T |
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| Q |
212 |
taactcgatgacatcaggtaaaaaatggaaccatgaagttaatgtttcttcacttgatattttgagtgctgattcagtga |
291 |
Q |
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| T |
43001299 |
taacttgatggcatcaggtaaaaaatggaatcatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtga |
43001378 |
T |
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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 10696099 - 10696264
Alignment:
| Q |
12 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
111 |
Q |
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| T |
10696099 |
tggacttcagaagagaaagaggttttcttggagaaatttgctgcctttggaaaagattttcaaaaaatttctactttccttgaccacaagacaacagcgg |
10696198 |
T |
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| Q |
112 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaagctgaagaggaaagatg |
177 |
Q |
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| T |
10696199 |
actgtgtggaattctactacaaaaatcacaagtctgattgttttgagaaaatcaagaagaaagatg |
10696264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 10695493 - 10695369
Alignment:
| Q |
36 |
ttcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagttctactacaaga |
135 |
Q |
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| T |
10695493 |
ttcttggagaaatttgcggcctttggaaaagattttcgaaaaatttctactttccttgaccacaagacaacagcagactgtgttgaattctaatacaaaa |
10695394 |
T |
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| Q |
136 |
atcacaaatctgaatgttttgagaa |
160 |
Q |
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| T |
10695393 |
atcataagtctgattgttttgagaa |
10695369 |
T |
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