View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_16 (Length: 446)
Name: NF8208A_low_16
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 42 - 446
Target Start/End: Complemental strand, 10600545 - 10600141
Alignment:
| Q |
42 |
aatctatgtaagaattgaaacatgccaagcctaagcctatctcttcctcttccttctcctcacataaatctcaactcacaacaaaactttaaccatttca |
141 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10600545 |
aatctatgtaagaattaaaacatgccaagcctaagcctatctcttcctcttccttctcctcacatcaatctcaactcacaacaaaactttaaccatttca |
10600446 |
T |
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| Q |
142 |
acaacccacaacaacttcacaaagccattacaaccttaaacctaacagacacagaatcaacccataacaacaaactcataacctcttctcttctccttaa |
241 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10600445 |
acaacccacaacaactccacaaagccattacaaccttaaacctaacagacacagaatcaacccataacaacaaactcataacctcttcacttctccttaa |
10600346 |
T |
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| Q |
242 |
acaatgcatccgaaccaaaaacacccacctcggcaaactccttcatcacaaactccccacctcaaatctccccctcgacaccctcctcttgaactccctc |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10600345 |
acaatgcatccgaaccaaaaacacccacctcggcaaactccttcatcacaaactcaccacctcaaatctccccctcgacaccctcctcttgaactccctc |
10600246 |
T |
|
| Q |
342 |
attcccctctactccaaatcaaacgaccctataaccgctttttccatcttccaatccatggaaaattccaaacgcgatgttgtttcatatagttcaatca |
441 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10600245 |
attaccctctactccaaatcaaacgaccctataaccgctttttccattttccaatccatggaaaattccaaacgcgatgttgtttcatatagttcaatca |
10600146 |
T |
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| Q |
442 |
tttct |
446 |
Q |
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| T |
10600145 |
tttct |
10600141 |
T |
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