View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_164 (Length: 286)
Name: NF8208A_low_164
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_164 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 40457070 - 40456793
Alignment:
| Q |
1 |
gttttgcaacaaagtcatgtatatctaactcttgtattaatctttctgttgttactatggctagtgattggataattgagacaggtgcttctgatcatat |
100 |
Q |
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| T |
40457070 |
gttttgcaacaaagtcaggtatatctaactctgctattaatctttctgttgttactaaggatagtgattggataattgatacaggtgcttctgatcatat |
40456971 |
T |
|
| Q |
101 |
gccttgtgatccacacatatttactaatttttctccttattgttccaaaactgtcattattaatgtcaatggagtccaatctcctattgaatgtgttggt |
200 |
Q |
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| T |
40456970 |
gacttgtgatccacacatatttactaatttttctccttattgttccaaaactgtcattattaatgtcaatggagtccaatctcctattgaaggtgttggt |
40456871 |
T |
|
| Q |
201 |
actgtatctctctcaccgtccctaacaatatccgatgtcttatttgttcctactctaaatgttaatcttatctctgtt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
40456870 |
actgtatctctctcaccgtccctaacaatatccgatgtcttatttgttcctactctaaatgtcaatcttatctatgtt |
40456793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 27517354 - 27517109
Alignment:
| Q |
12 |
aagtcatgtatatctaactcttgtattaatctttctgttgttactatggctagtgattggataattgagacaggtgcttctgatcatatgccttgtgatc |
111 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||| || ||||| ||| |||| |||||| ||||||| | |
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| T |
27517354 |
aagtcaggtatatctaactctgctcttaatctttctgttgttactaggggtagagattggataatcgatacaggggctactgaccatatgacttgtgaac |
27517255 |
T |
|
| Q |
112 |
cacacatatttactaatttttctccttattgt---tccaaaactgtcattattaatgtcaatggagtccaatctcctattgaatgtgttggtactgtatc |
208 |
Q |
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| T |
27517254 |
gtcatgtatttactaatttttcctctggttctaattctaaaactatcattattaatgccaatggagtcccatctcctatttaaggtgttggtactgtatc |
27517155 |
T |
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| Q |
209 |
tctctcaccgtccctaacaatatccgatgtcttatttgttcctact |
254 |
Q |
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|| ||||| ||| || ||||||| ||||||||||||||||||||| |
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| T |
27517154 |
cctttcaccctccttatcaatatctgatgtcttatttgttcctact |
27517109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 56393116 - 56392868
Alignment:
| Q |
12 |
aagtcatgtatatctaactcttgtattaatctttctgttgttactatggctagtgattggataattgagacaggtgcttctgatcatatgccttgtgatc |
111 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||| || ||||| ||| |||| |||||| ||||||| | |
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| T |
56393116 |
aagtcaggtatatctaactctgctcttaatctttctgttgttactaggggtagagattggataatcgatacaggggctactgaccatatgacttgtgaac |
56393017 |
T |
|
| Q |
112 |
cacacatatttactaattttt-ctcc-----ttattgttccaaaactgtcattattaatgtcaatggagtccaatctcctattgaatgtgttggtactgt |
205 |
Q |
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|| ||||||||||||||| ||| || | ||| |||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
56393016 |
gtcatgtatttactaattttttctctggtggttctaattctaaaactatcattattaatgccaatggagtcccatctcctattgaaggtgttggtactgt |
56392917 |
T |
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| Q |
206 |
atctctctcaccgtccctaacaatatccgatgtcttatttgttcctact |
254 |
Q |
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||| || ||||| ||| || ||||||| ||||||||||||||||||||| |
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| T |
56392916 |
atccctttcaccctccttatcaatatctgatgtcttatttgttcctact |
56392868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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