View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_165 (Length: 286)
Name: NF8208A_low_165
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_165 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 25125233 - 25125504
Alignment:
| Q |
12 |
atgaaattataagattctcaatcatactgctttttgtgtaactctcataataccatccaagctatcttataatctttctttagacattctacaaaatcaa |
111 |
Q |
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| T |
25125233 |
atgaaatcataagattcccaatcatact---ttttgtgtaactctcataataccatcgaagctatcttataatctttctttagacattctacaaaatcaa |
25125329 |
T |
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| Q |
112 |
acagcaaaactaaatgataagttatcctctcctctttcctcctaatttctcgttttatttcaatttttatattatgcagctttatggcgtggagccagtt |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25125330 |
acagtaaaactaaatgataagttatcctctcctctttcctcctaatttctcgttttatttcaatttttatattatgcagctttatggcgtggagccagtt |
25125429 |
T |
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| Q |
212 |
gaaagcttggctagttataacactgttttgttccttagagttgaaataagaacttacttttgaagctgttgctga |
286 |
Q |
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| T |
25125430 |
gaaagcctggctagttataacactgttttgttccttagagttgaaataagaacttacttttgaagctgttgctga |
25125504 |
T |
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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 46936943 - 46936858
Alignment:
| Q |
131 |
agttatcctctcctctttcctcctaatttctcgttttatttcaatttttatattatgcagctttatggcgtggagccagttgaaag |
216 |
Q |
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| T |
46936943 |
agttatcctctcctctttcctcctaatttatcgttttgtttcaatttttatattatgcagctgtatggggtggagccagtcgaaag |
46936858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 46936840 - 46936766
Alignment:
| Q |
212 |
gaaagcttggctagttataacactgttttgttccttagagttgaaataagaacttacttttgaagctgttgctga |
286 |
Q |
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| T |
46936840 |
gaaagcctggttagttataacactgttttgttccttagagttgaaataagaacttactttcgaagctgttgctga |
46936766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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