View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_168 (Length: 281)
Name: NF8208A_low_168
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_168 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 99637 - 99817
Alignment:
| Q |
7 |
gtatcatagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagaggggttcatgg |
106 |
Q |
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| T |
99637 |
gtatcagataccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtttccccaatggattagtttggaagaagtcttgagagaggttcatgg |
99736 |
T |
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| Q |
107 |
aggacgagtttatcgccataggtgtgatgttgagggtggcaggagctggttttatgttatggtgctgtaactgttggataa |
187 |
Q |
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| T |
99737 |
aggacgagtttaccgccataggtttgatgttgagggtggcaggggctgattttatgttatggtgttgtaaccgttggataa |
99817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 32463097 - 32462954
Alignment:
| Q |
7 |
gtatcatagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatgga-ttagtttggaagaagtcttaagaggggttcatg |
105 |
Q |
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| T |
32463097 |
gtatcagagaccatgtctatggtgtgatgtccagtggtgtgattgcgcaaaggtctcatgaatggagttcatttggaagaagtcctgagagagtttcatg |
32462998 |
T |
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| Q |
106 |
gaggacgagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
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| T |
32462997 |
gaggacaagtttaccgccgtaggcgtgatgttgagggtgacagg |
32462954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 25966712 - 25966823
Alignment:
| Q |
7 |
gtatcatagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagaggggttcatgg |
106 |
Q |
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| T |
25966712 |
gtatcagagaccatgtgtatgttgtgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaactcttgagagagattcatgg |
25966811 |
T |
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| Q |
107 |
aggacgagttta |
118 |
Q |
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| T |
25966812 |
aggacgagttta |
25966823 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 27575780 - 27575638
Alignment:
| Q |
7 |
gtatcatagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagaggggttcatgg |
106 |
Q |
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| T |
27575780 |
gtatcagaaaccatgtgtatgctctgatgtccagtggtgtgattgcgcaagggtcttctgaatgagttcatttggaagaagtcttgagagaggttcatgg |
27575681 |
T |
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| Q |
107 |
aggacgagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
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| T |
27575680 |
aggacgagtttaccgtcgtaggcttattgttgagggtggcagg |
27575638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 14912592 - 14912703
Alignment:
| Q |
34 |
tgtccagtggtgtgattgtgcaagggtctcctcaatggattagtttggaagaagtcttaagaggggttcatggaggacgagtttatcgccataggtgtga |
133 |
Q |
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| T |
14912592 |
tgtccaatggtgtgattgtgcaagggtctcctgaatgagttcatttggaaggagtcttggtagaggtttatggaggatgagtttaccgccgtaggcgtga |
14912691 |
T |
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| Q |
134 |
tgttgagggtgg |
145 |
Q |
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| T |
14912692 |
tgttgtgggtgg |
14912703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 32421233 - 32421282
Alignment:
| Q |
100 |
ttcatggaggacgagtttatcgccataggtgtgatgttgagggtggcagg |
149 |
Q |
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||||||||||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
32421233 |
ttcatggaggacgagtttactgccgtaggcgtgatgttgagggtggcagg |
32421282 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 54454174 - 54454110
Alignment:
| Q |
7 |
gtatcatagaccatgtttatgctggcatgtccagtggtgtgattgtgcaagggtctcctcaatgg |
71 |
Q |
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| T |
54454174 |
gtatcagagaccatgtctgtgttgtgatgtccattggtgtgattgcgcaagggtctcctcaatgg |
54454110 |
T |
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