View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_171 (Length: 279)
Name: NF8208A_low_171
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_171 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 18787085 - 18786995
Alignment:
| Q |
99 |
gtttaatagcatacaatacaatatcttcttgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgct |
189 |
Q |
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| T |
18787085 |
gtttaatagcatacaatacaatatcttcatgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgct |
18786995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 18786949 - 18786905
Alignment:
| Q |
235 |
cttccttaattcttacacaatatatatgcagaagctgtacatatt |
279 |
Q |
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| T |
18786949 |
cttccttatttctaacacaatatatattcagaagctgtacatatt |
18786905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 18787179 - 18787149
Alignment:
| Q |
7 |
aacaggatgctcgtatttgacacagctgcag |
37 |
Q |
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| T |
18787179 |
aacaggatgctcgtatttgacacagctgcag |
18787149 |
T |
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