View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_18 (Length: 446)
Name: NF8208A_low_18
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_18 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 7440894 - 7440462
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgcgatgaattagcgtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata |
111 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7440894 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaata |
7440795 |
T |
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| Q |
112 |
ttacctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataa |
211 |
Q |
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| T |
7440794 |
ttacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataa |
7440695 |
T |
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| Q |
212 |
tttataacgcttgatttcctcaattcactctagcc----atttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac |
307 |
Q |
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| T |
7440694 |
tttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac |
7440595 |
T |
|
| Q |
308 |
atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacg |
407 |
Q |
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| T |
7440594 |
atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacg |
7440495 |
T |
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| Q |
408 |
attccattacaaaagaaagtctaacagtcttag |
440 |
Q |
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| T |
7440494 |
attccattacaaaagaaagtataacagtcttag |
7440462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 6397753 - 6397845
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgcgatgaattagcgtttcggtgttacaaacaatatatatagtattactgctatgattcagtt |
104 |
Q |
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| T |
6397753 |
atagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt |
6397845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 42517165 - 42517120
Alignment:
| Q |
45 |
gatgaattagcgtttcggtgttacaaacaatatatatagtattact |
90 |
Q |
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| T |
42517165 |
gatgaattagggtttcggtgttacaaacaatatatatagtactact |
42517120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 41941134 - 41941063
Alignment:
| Q |
45 |
gatgaattagcgtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc |
116 |
Q |
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| T |
41941134 |
gatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc |
41941063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 4490394 - 4490295
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgcgatgaattagcgtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata |
111 |
Q |
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| T |
4490394 |
atagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata |
4490295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 36010253 - 36010202
Alignment:
| Q |
63 |
tgttacaaacaatatatatagtattactgctatgattcagttaacaatatta |
114 |
Q |
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| T |
36010253 |
tgttacaaacaatatatataatactacttctacgattcagttcacaatatta |
36010202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 19382 - 19342
Alignment:
| Q |
45 |
gatgaattagcgtttcggtgttacaaacaatatatatagta |
85 |
Q |
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| T |
19382 |
gatgaattagggtttcactgttacaaacaatatatatagta |
19342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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