View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_180 (Length: 276)
Name: NF8208A_low_180
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_180 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 4751608 - 4751351
Alignment:
| Q |
19 |
atcaaatgcggtgctttgtggtacttggaaatgataaaaatttaagacattatgttagaacaaaccacagtgatacttatttctttctggatccatttga |
118 |
Q |
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| T |
4751608 |
atcaaatgcggtgctttgtggtacttggaaatgataaaaatttaagacattacgttagaacaaaccacggtgatacttatttctttctggatccatttga |
4751509 |
T |
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| Q |
119 |
tgcttagtgctgcctagaatccatagcacaattaagacttgcatgtttattttattcactaacacattgtttgatacaagagaaactgggaggaaattga |
218 |
Q |
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| T |
4751508 |
tgcttagtgctgcctagaatccatagcacaattaagacttgcatgtttattttattcactaacacattgtttgatacaagagaaactgggaggaaattga |
4751409 |
T |
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| Q |
219 |
agttttctcctgtttgcttcaagagagaaaatggagatatagaaaacttagcagtgga |
276 |
Q |
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| T |
4751408 |
agttttctcctgtttgcttcaagagagaaaatggagatatagaaaacttagcagtgga |
4751351 |
T |
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