View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_182 (Length: 275)
Name: NF8208A_low_182
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_182 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 7688621 - 7688874
Alignment:
| Q |
11 |
catagactgggtgcgtacaaaaaac-atatatcaaaagacgtccacattttaaatgaacatcagttaccatgaacgattaatttcattgattacgcacga |
109 |
Q |
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| T |
7688621 |
catagacggggtgcgtataaaaaagtatatatcgaaagacgtctacattttaaatgaacatcagttaccatgaatgattagtctcattgattacgcacga |
7688720 |
T |
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| Q |
110 |
tatatagattggtttacaaacgaaaaagaaatgtgaaatattttagaaatattaaataatgtagtactatggtgaaataagatatatggaatttttctat |
209 |
Q |
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| T |
7688721 |
tatatagattggtttacaaacgaaaaagaaatgtgaaatattttagaaatattaaataatgtagcactatggtgaaat--gatatatagaatttttctat |
7688818 |
T |
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| Q |
210 |
taaaaattacgctatcaatttgtagtagtattaaaatactcatttaaaatgtgtca |
265 |
Q |
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| T |
7688819 |
taaaaattatgctatcaatttgtagtagtattaaaatactcatttaaaatgtgtca |
7688874 |
T |
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