View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_185 (Length: 273)
Name: NF8208A_low_185
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_185 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 33325879 - 33326117
Alignment:
| Q |
23 |
tacccaaaattacactttgctcttaagggtacacaatttgtacccaaaatcaaagcagatatattatacactaatgatcacaactccaagttgtttttta |
122 |
Q |
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| T |
33325879 |
tacccaaaattacactttgctcttaagggtacacaatttgtacccaaaatcaaagcagatatattatacactaatgatcacaactccaagttgtttttta |
33325978 |
T |
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| Q |
123 |
aaaatttactttatctataacctaagcgtnnnnnnntaaaattccagacccctaatctaaacagaaacataataatctctgatatcgtcgaaactacaat |
222 |
Q |
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|||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33325979 |
aaaattgactttatctataacctaagtgtaaaaaaa-agaattccagacccctaatctaaacagaaacataataatctctgatatcgtcgaaactacaat |
33326077 |
T |
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| Q |
223 |
gcaactgcaattgagaccgcatcagcaattcatcgtgacc |
262 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
33326078 |
gcaactgcaattaagaccgcatcagcaattcatcgtgacc |
33326117 |
T |
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