View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_19 (Length: 445)
Name: NF8208A_low_19
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 10599246 - 10598818
Alignment:
| Q |
1 |
ttgtttgagaagaatttggtttcgggtagtgggatcgttggtgatgcaagtgtgaaagattcgaatttaaattctgaacaagacataaaccctgaaattg |
100 |
Q |
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| T |
10599246 |
ttgtttgagaagaatttggtttcggagacag---ttgttgatgatacaaatgtgaaagattttaatttgaattctgaacaagacttggaccgtgaagttg |
10599150 |
T |
|
| Q |
101 |
aatacactggtagtagcaaagttagttcgtttttatatgctagcctgttgagtggtgctgcttgtattggtacaataggtaagggtgaacaaattcatgc |
200 |
Q |
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|||| ||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10599149 |
aatatgttggtagtgg---agttagttcgtttacatatgctagcctcttgagtggtgctgcttgtattggtacaattggtaagggtgaacaaattcatgc |
10599053 |
T |
|
| Q |
201 |
catggtggtgaagatgggatttcggactgacctaagtgttaataatgctttgatctctatgtattctaagtgtggaaacaaagaagctgctttacaggtc |
300 |
Q |
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| T |
10599052 |
catggtggttaagattggatttcggactgacttaagtgttaataatgctttgatctctatgtattccaagtgtggaaacaaagaagctgctttacaggtc |
10598953 |
T |
|
| Q |
301 |
tttaatgacatggaagatcgcaatgtcataacttggacctctatcataaatggttttgcaaaacatgggtttgctacaaaagcactagaattgttctatg |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
10598952 |
tttaatgacatggaagattgcaatgtcataacttggacctctatcataaatggttttgcaaaacatggatttgcttcaaaagcactagaattgttctata |
10598853 |
T |
|
| Q |
401 |
atatgctcaaaacaggtgtgaaacctaatgatgtc |
435 |
Q |
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||||||| ||||||||||||| |||||||||||| |
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| T |
10598852 |
atatgcttgaaacaggtgtgaagcctaatgatgtc |
10598818 |
T |
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