View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_192 (Length: 271)

Name: NF8208A_low_192
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_192
NF8208A_low_192
[»] chr3 (2 HSPs)
chr3 (10-271)||(19753267-19753528)
chr3 (10-271)||(19732737-19732998)
[»] chr5 (1 HSPs)
chr5 (53-195)||(40218880-40219022)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 19753528 - 19753267
Alignment:
Q  10 gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc 109  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19753528 gtgttgcaattagggcacaatcagaataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc 19753429  T
Q  110 atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19753428 atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc 19753329  T
Q  210 gcatcattctaacagtaagttttgccttagttgcgtcttttgcagcagcatccaaactgtga 271  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19753328 gtatcattctaacagtaagttttgccttagttgcgtcttttgcagtagcatccaaactgtga 19753267  T

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Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 19732998 - 19732737
Alignment:
Q  10 gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19732998 gtgttgcaattagggcacaatcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc 19732899  T
Q  110 atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19732898 atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaagttttgattgttcatcactgc 19732799  T
Q  210 gcatcattctaacagtaagttttgccttagttgcgtcttttgcagcagcatccaaactgtga 271  Q
    |  ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  19732798 gtgtcattgtaacagtaatttttgccttagttgcgtcttttgcagcagcagccaaactgtga 19732737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 40218880 - 40219022
Alignment:
Q  53 aataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagcatcttagctacttgctctgcatgagaaatattattaacaacca 152  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||| ||||| || | ||||||| | || | ||||||  ||| |||||||| ||| ||||    
T  40218880 aataattatacctcggtatcacatgcataaataagatgccggtattttacagtgatcatcttaacaacctcctctgcgagaggaatattatcaaccacca 40218979  T
Q  153 gtatgtcttcatagatactacagagcctttcccgaagttttga 195  Q
    | || ||||||||||||| |||||| || ||||||||||||||    
T  40218980 gaatatcttcatagatacgacagagtctgtcccgaagttttga 40219022  T

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