View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_202 (Length: 266)
Name: NF8208A_low_202
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_202 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 32781118 - 32780871
Alignment:
| Q |
7 |
aaataaacctaaaaagaaaccctacaaagaaggctaatagtaatagtagcaagaagagtcatccacttctcaacttcttggattttcgtaggaaaaagag |
106 |
Q |
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| T |
32781118 |
aaataaacctaaaaagaaaccctacaaagaaggctaatagtaatagtagcaagaagagtcatccacttctcaacttcttggattttcgtaggaaaaagaa |
32781019 |
T |
|
| Q |
107 |
aacaacagctagacctgaatttgcaaggtatattgagtatcttaaggtaggaggcatgtgggatttgaattccaataaaccagttatctattacaagtga |
206 |
Q |
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| T |
32781018 |
aacaacagctagacctgaatttgcaaggtatattgagtatcttaaggaaggaggcatgtgggatttgaattccaataaaccagttatctattacaagtga |
32780919 |
T |
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| Q |
207 |
tacagcttgattgctttgaattaatttaatctttgtacactgaatatt |
254 |
Q |
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| T |
32780918 |
tacagcttgattgctttgaattaatttaatctttgtacactgaatatt |
32780871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 7996341 - 7996463
Alignment:
| Q |
65 |
tcatccacttctcaacttcttggattttcgtaggaaaaagagaacaacagctagacctgaatttgcaaggtatattgagtatcttaaggtaggaggcatg |
164 |
Q |
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| T |
7996341 |
tcatccacttctcaatttctttgattttcggagaaagaagaaagcaacatcaaagcctgaatttgcaagatatgttgagtatttgaaggaaggaggcatg |
7996440 |
T |
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| Q |
165 |
tgggatttgaattccaataaacc |
187 |
Q |
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| T |
7996441 |
tgggattctaattcaaataaacc |
7996463 |
T |
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