View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_219 (Length: 258)
Name: NF8208A_low_219
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_219 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 87596 - 87358
Alignment:
| Q |
8 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87596 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
87497 |
T |
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| Q |
108 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87496 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
87397 |
T |
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| Q |
208 |
atttttaaatttcttctttgactccatattcatctcagt |
246 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
87396 |
atttttcaatttcttctttgactccatattcatctcagt |
87358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 95612 - 95388
Alignment:
| Q |
8 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
95612 |
tgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgt |
95513 |
T |
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| Q |
108 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
207 |
Q |
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| T |
95512 |
gaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcac |
95427 |
T |
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| Q |
208 |
atttttaaatttcttctttgactccatattcatctcagt |
246 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| |
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| T |
95426 |
atttttcaatttcttttttgactccatattcatctcagt |
95388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 40878687 - 40878925
Alignment:
| Q |
8 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878687 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
40878786 |
T |
|
| Q |
108 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878787 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
40878886 |
T |
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| Q |
208 |
atttttaaatttcttctttgactccatattcatctcagt |
246 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
40878887 |
atttttcaatttcttctttgactccatattcatctcagt |
40878925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 40870670 - 40870894
Alignment:
| Q |
8 |
tgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgt |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
40870670 |
tgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgt |
40870769 |
T |
|
| Q |
108 |
gaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcac |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |
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| T |
40870770 |
gaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgttcac |
40870855 |
T |
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| Q |
208 |
atttttaaatttcttctttgactccatattcatctcagt |
246 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| |
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| T |
40870856 |
atttttcaatttcttttttgactccatattcatctcagt |
40870894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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