View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_221 (Length: 258)
Name: NF8208A_low_221
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_221 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 5401861 - 5401622
Alignment:
| Q |
21 |
cctttgagtaatgtacatgtaaaggcttaaaaagtgtaaaataaaataattg---ataaacaccaacagaataataatagtacctatcatgagcttggaa |
117 |
Q |
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| T |
5401861 |
cctttgagtaatgtacatgtaaagacc-aaaaagtggaaaataaaataatgataaataaacactaacagaataataatattacctatcatgagcttggaa |
5401763 |
T |
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| Q |
118 |
tgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagatgctctccttttcccttatgct |
217 |
Q |
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| T |
5401762 |
tgaacataaaccatgaatcttctatttttctgtgcattccagtattgtgtttcaggataaggagaatccaatggaagatactctccttttcccttatgct |
5401663 |
T |
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| Q |
218 |
ccctatttgcaagacaaaagaaattcaagtagtcttttgga |
258 |
Q |
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| T |
5401662 |
ccctatttgcaagacaaaagaaattcaagtagtcttttgga |
5401622 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 43052059 - 43052219
Alignment:
| Q |
98 |
tacctatcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagatg |
197 |
Q |
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| T |
43052059 |
tacctatcatgagcttggagtgaacataaaccatgaatcttctatttttctgtgcactccaatattgagtatcaggaagaggagaatgtggaggaagata |
43052158 |
T |
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| Q |
198 |
ctctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttgga |
258 |
Q |
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| T |
43052159 |
ttcttcattttccttcttttctctatttgcaaggcaaaagaaattcaagtaatctcttgga |
43052219 |
T |
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