View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_223 (Length: 257)
Name: NF8208A_low_223
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_223 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30709517 - 30709255
Alignment:
| Q |
1 |
gtgcatcaacgccacaacggagaacagtccagcacctccttccattttccattggagaatgttatagatattgtggagca--atccgattgatactttgg |
98 |
Q |
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| T |
30709517 |
gtgcagcaacgccacaaccgagaacagtccggaacctccttccattttccattggagaatgttatagatattgtggagcacaatccgattgatactttgg |
30709418 |
T |
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| Q |
99 |
gaacgattcaacaga--gaggaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctattgacgc |
196 |
Q |
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| T |
30709417 |
gaacgattcaacacatagaggaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctactgccac |
30709318 |
T |
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| Q |
197 |
ttcttctctgagggagactgttcctgaaacaca--gcaagtggagcaacctaatatatgccca |
257 |
Q |
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| T |
30709317 |
ttcttctccgagggagactgttcttgaaacacagggcaagtggagcaacctaatatatgccca |
30709255 |
T |
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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 13231548 - 13231764
Alignment:
| Q |
32 |
gcacctccttccattttccattggagaatgttatagatattgtgga--gcaatccgattgatactttgggaacgattcaacagagaggaaaatactccta |
129 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||| | |||||| | | ||||||| || |
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| T |
13231548 |
gcacctccttccattttcgattggagaatgtaatagatattgtggagcgcaatcagattgatactttgggaatggttcaac-----gcataatactcata |
13231642 |
T |
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| Q |
130 |
ttttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtctattgacgcttcttctctgagggagactgttcctgaaacaca |
229 |
Q |
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| T |
13231643 |
ttttagagccgattaagccgttgaagacatcagctgttgcgacatctattggtgtgtctactgccacttcttctaggagggagatggttcttgaaacaca |
13231742 |
T |
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| Q |
230 |
gcaagtggagcaacctaatata |
251 |
Q |
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| T |
13231743 |
aaaggtgtagcaacctagtata |
13231764 |
T |
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