View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8208A_low_228 (Length: 254)
Name: NF8208A_low_228
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_228 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 5034126 - 5033894
Alignment:
| Q |
8 |
atggtgttatgaagagtattgttgacagtggctctgcctataaagctgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaacgagcta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5034126 |
atggtgttatgaagagtattgttgacagtgactctgcctataaagctgatgcgatacgaacggcttttgtttttacatcagtgaagtagcaaactagcta |
5034027 |
T |
|
| Q |
108 |
aaggagtgtttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagctacaac |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5034026 |
aaggagtatttggctgcagaattatcccgaaaaagggctggtcgggtagatcatttccatacacataatttctgtcttccctttacttacaagctacaac |
5033927 |
T |
|
| Q |
208 |
tccaagtctctaagtcacagccatcttaatgttgaaataag |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
5033926 |
tcca--------agtcacagccatcttaatgttgaaataag |
5033894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 4974720 - 4974768
Alignment:
| Q |
99 |
aacgagctaaaggagtgtttggctgcagaattatcccgaaaaagggctg |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
4974720 |
aacgagctaaaggagtgtttggctgcagaattagcccgaaaaggggctg |
4974768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 4999673 - 4999720
Alignment:
| Q |
104 |
gctaaaggagtgtttggctgcagaattatcccgaaaaagggctggtcg |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| || |||||| |
|
|
| T |
4999673 |
gctaaaggagtgtttggctgaagaattagcccgaaaaaaggttggtcg |
4999720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University