View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_229 (Length: 253)
Name: NF8208A_low_229
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_229 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 31658717 - 31658969
Alignment:
| Q |
1 |
atcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctct |
100 |
Q |
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| T |
31658717 |
atcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctct |
31658816 |
T |
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| Q |
101 |
attgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttg |
200 |
Q |
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| T |
31658817 |
tttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttg |
31658916 |
T |
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| Q |
201 |
atgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtg |
253 |
Q |
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| T |
31658917 |
atgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtg |
31658969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 31650457 - 31650298
Alignment:
| Q |
43 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaac |
139 |
Q |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
140 |
gagttttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
196 |
Q |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 31657342 - 31657249
Alignment:
| Q |
160 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtg |
253 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtg |
31657249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
80 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
124 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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