View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_231 (Length: 252)

Name: NF8208A_low_231
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_231
NF8208A_low_231
[»] chr3 (27 HSPs)
chr3 (18-247)||(41985620-41985852)
chr3 (18-245)||(41980846-41981073)
chr3 (26-128)||(9494822-9494924)
chr3 (26-142)||(9343845-9343961)
chr3 (26-142)||(9448314-9448430)
chr3 (34-142)||(9329844-9329952)
chr3 (34-142)||(9336548-9336656)
chr3 (26-142)||(9407366-9407482)
chr3 (26-139)||(9655360-9655473)
chr3 (26-139)||(9425573-9425686)
chr3 (26-139)||(9646367-9646480)
chr3 (26-142)||(9617463-9617579)
chr3 (34-142)||(9695616-9695724)
chr3 (34-127)||(9340679-9340772)
chr3 (40-142)||(9416587-9416689)
chr3 (26-142)||(9397785-9397903)
chr3 (38-128)||(9352913-9353003)
chr3 (34-127)||(9347995-9348088)
chr3 (34-127)||(9369649-9369742)
chr3 (27-148)||(9756381-9756502)
chr3 (26-142)||(9432896-9433012)
chr3 (26-134)||(9626488-9626596)
chr3 (40-108)||(9441815-9441883)
chr3 (34-86)||(9614009-9614061)
chr3 (94-142)||(9686751-9686799)
chr3 (30-89)||(9377090-9377149)
chr3 (27-56)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (82-247)||(13170579-13170744)
chr8 (24-247)||(44688680-44688903)
[»] chr2 (1 HSPs)
chr2 (26-139)||(20694304-20694417)
[»] chr1 (8 HSPs)
chr1 (18-247)||(18991196-18991422)
chr1 (26-124)||(235213-235311)
chr1 (26-93)||(4439860-4439927)
chr1 (23-137)||(4428628-4428742)
chr1 (26-119)||(8814385-8814478)
chr1 (26-124)||(251412-251510)
chr1 (34-119)||(231589-231674)
chr1 (26-117)||(246867-246958)
[»] chr6 (7 HSPs)
chr6 (26-142)||(7041496-7041612)
chr6 (26-124)||(7046839-7046937)
chr6 (63-124)||(7025793-7025854)
chr6 (63-124)||(7029850-7029911)
chr6 (63-124)||(9170854-9170915)
chr6 (63-122)||(9159515-9159574)
chr6 (63-124)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (23-129)||(3695687-3695792)
chr7 (34-142)||(450111-450219)
[»] chr5 (1 HSPs)
chr5 (26-128)||(18571108-18571213)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 41985620 - 41985852
Alignment:
Q  18 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985620 gacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 41985719  T
Q  118 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---taacgct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   | || ||    
T  41985720 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccct 41985819  T
Q  215 cactccctaccgggaatttcatgtcccctccat 247  Q
    ||||| ||||| |||||||||||||||||||||    
T  41985820 cactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 41980846 - 41981073
Alignment:
Q  18 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 117  Q
    |||| |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  41980846 gacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctct 41980945  T
Q  118 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactaacgctcac 217  Q
    |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || | || |||||    
T  41980946 ttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcac 41981045  T
Q  218 tccctaccgggaatttcatgtcccctcc 245  Q
    || ||||| |||||||||  ||||||||    
T  41981046 tctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 9494924 - 9494822
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || |||||||||||||    
T  9494924 acaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatc 9494825  T
Q  126 aag 128  Q
    |||    
T  9494824 aag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9343845 - 9343961
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| |||||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  126 aagtctgaacacatcaa 142  Q
    |||  | ||||||||||    
T  9343945 aagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9448314 - 9448430
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  126 aagtctgaacacatcaa 142  Q
    |||  | ||||||||||    
T  9448414 aagcttaaacacatcaa 9448430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  134 acacatcaa 142  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  134 acacatcaa 142  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9407366 - 9407482
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| ||    
T  9407366 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtc 9407465  T
Q  126 aagtctgaacacatcaa 142  Q
    |||||| ||||||||||    
T  9407466 aagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 9655473 - 9655360
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9655473 acaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9655374  T
Q  126 aagtctgaacacat 139  Q
    || |||||| ||||    
T  9655373 aaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 9425573 - 9425686
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| ||    
T  9425573 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtc 9425672  T
Q  126 aagtctgaacacat 139  Q
    |||||| |||||||    
T  9425673 aagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 9646480 - 9646367
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9646480 acaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9646381  T
Q  126 aagtctgaacacat 139  Q
    || |||||| ||||    
T  9646380 aaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 9617579 - 9617463
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| |||||||     
T  9617579 acaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatg 9617480  T
Q  126 aagtctgaacacatcaa 142  Q
    ||  |||||||| ||||    
T  9617479 aaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 9695724 - 9695616
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 133  Q
    |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||    
T  9695724 gaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctga 9695625  T
Q  134 acacatcaa 142  Q
    | |||||||    
T  9695624 atacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 127  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  40 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 139  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  140 caa 142  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9397785 - 9397903
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctca 123  Q
    |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | ||||||     
T  9397785 acaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcg 9397884  T
Q  124 tcaagtctgaacacatcaa 142  Q
    |||||||| ||||||||||    
T  9397885 tcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 9352913 - 9353003
Alignment:
Q  38 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 128  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   |||||| ||||| ||||||||| ||||||||||    
T  9352913 cagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 127  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 127  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  27 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 126  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  127 agtctgaacacatcaagcttta 148  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 9432896 - 9433012
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||    
T  9432896 acaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatc 9432995  T
Q  126 aagtctgaacacatcaa 142  Q
    ||||||||| |||||||    
T  9432996 aagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 9626596 - 9626488
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||  ||| || ||||||||||||||||||||||     
T  9626596 acaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatg 9626497  T
Q  126 aagtctgaa 134  Q
    || ||||||    
T  9626496 aaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 9441883 - 9441815
Alignment:
Q  40 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 108  Q
    ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441883 gaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9614061 - 9614009
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 86  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614061 gaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  94 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 142  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 9377090 - 9377149
Alignment:
Q  30 atccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 89  Q
    |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377090 atcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  27 caaatccgaagcagaagcagaaaacgaaca 56  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  82 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  182 agtcatatatgtctactagcaacaactaacgctcactccctaccgggaatttcatgtcccctccat 247  Q
     |||||| ||||| ||||||||||||| || ||| ||| | |||  ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 44688903 - 44688680
Alignment:
Q  24 agacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctca 123  Q
    ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | |||||||    
T  44688903 agacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctca 44688804  T
Q  124 tcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactaacgctcactcccta 223  Q
    |  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||| ||  |||||| |||    
T  44688803 ttgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctcta 44688704  T
Q  224 ccgggaatttcatgtcccctccat 247  Q
    || ||||||| |||||||||||||    
T  44688703 ccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 20694417 - 20694304
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||    
T  20694417 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatc 20694318  T
Q  126 aagtctgaacacat 139  Q
    ||| ||||||||||    
T  20694317 aagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 18991196 - 18991422
Alignment:
Q  18 gacatcagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 117  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||      
T  18991196 gacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttcttt 18991292  T
Q  118 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactaacgctcac 217  Q
     |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||| ||  ||||    
T  18991293 ctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcac 18991392  T
Q  218 tccctaccgggaatttcatgtcccctccat 247  Q
     | |||||  ||||||||| ||||||||||    
T  18991393 actctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 235213 - 235311
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235213 acaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 4439860 - 4439927
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439860 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 4428628 - 4428742
Alignment:
Q  23 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 122  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | |||||||    
T  4428628 cagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctc 4428727  T
Q  123 atcaagtctgaacac 137  Q
    |||||| || |||||    
T  4428728 atcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 8814478 - 8814385
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 119  Q
    |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814478 acaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 251510 - 251412
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251510 acaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 119  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 246867 - 246958
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 117  Q
    |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246867 acaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 7041496 - 7041612
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 125  Q
    ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | |||||| ||||| ||||||||||||||||     
T  7041496 acaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatt 7041595  T
Q  126 aagtctgaacacatcaa 142  Q
    |||| | |||| |||||    
T  7041596 aagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 7046839 - 7046937
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||| |||  |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046839 acaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  63 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  63 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  63 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  63 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 122  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  63 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 124  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 3695687 - 3695792
Alignment:
Q  23 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 122  Q
    |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  ||||||||  || ||||||| ||||||    
T  3695687 cagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctc 3695785  T
Q  123 atcaagt 129  Q
    || ||||    
T  3695786 attaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  34 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 133  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  134 acacatcaa 142  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 18571108 - 18571213
Alignment:
Q  26 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaacttgacccatttcttctccttctc 122  Q
    |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| || ||||| ||||||||||||||    
T  18571108 acaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctc 18571207  T
Q  123 atcaag 128  Q
    ||||||    
T  18571208 atcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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