View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_237 (Length: 251)
Name: NF8208A_low_237
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_237 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 77 - 241
Target Start/End: Original strand, 18022590 - 18022754
Alignment:
| Q |
77 |
tgaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacaagcagccttatgtacattttatatgcaacaaaacaaactgatcattatgcac |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18022590 |
tgaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacatgcagccttatgtacattttatatgcaacaaaacaaactgatcattatgcac |
18022689 |
T |
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| Q |
177 |
atgaaggttggtaaacacttcttacctctcgctctcgcttcctcttttccttcattttgatgtcc |
241 |
Q |
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| T |
18022690 |
aagaaggttggtaaacacttcttacctctcgctctcgcttcctcttttccttcattttgaggtcc |
18022754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 19672392 - 19672550
Alignment:
| Q |
78 |
gaagatatttccatcaagtaaatatgcaagtcgtaacaaagcgcacaagcagccttatgtacattttatatgcaacaaaacaaactgatcattatgcaca |
177 |
Q |
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| T |
19672392 |
gaagatatttccattaaataagcatgcaagtcgtaacaaagaatacaagcaaccttatgtacattttatatgtaacaaaacaaactgatccatatgcata |
19672491 |
T |
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| Q |
178 |
tgaaggttggtaaacacttcttacctctcgctctcgcttcctcttttccttcattttga |
236 |
Q |
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| T |
19672492 |
acaagattgggaaatacttcttacctctcgctcccgcttcctcttttccttcattttga |
19672550 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 3275278 - 3275206
Alignment:
| Q |
7 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactga |
79 |
Q |
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| T |
3275278 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactga |
3275206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 3279854 - 3279783
Alignment:
| Q |
7 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
78 |
Q |
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| T |
3279854 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
3279783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 28601474 - 28601545
Alignment:
| Q |
7 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
78 |
Q |
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| T |
28601474 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaactg |
28601545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 28596896 - 28596966
Alignment:
| Q |
7 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaact |
77 |
Q |
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| T |
28596896 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaatattcttctgaaatcaaact |
28596966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 24395249 - 24395291
Alignment:
| Q |
37 |
atatatcaatcagagaaaaaatattcttctgaaatcaaactga |
79 |
Q |
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| T |
24395249 |
atatatcaatcagagaaaaaatattcttctcaaatcaaactga |
24395291 |
T |
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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 298000 - 297931
Alignment:
| Q |
7 |
tatataattcttgtacatgttcaataaaacatatatcaatcagagaaaaaa-tattcttctgaaatcaaact |
77 |
Q |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
298000 |
tatataatccttgtacatgttcaatgaaaaatat--caatcagagaaaaaaatattcttctcaaatcaaact |
297931 |
T |
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