View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_239 (Length: 250)
Name: NF8208A_low_239
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_239 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 31248577 - 31248343
Alignment:
| Q |
7 |
gcaatggatttacaccagttaaaa-ttttaatgattgaaaatttattgatgaggtatgtttggaagaaaaaagtttaaagatacaattgatttcacagca |
105 |
Q |
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| T |
31248577 |
gcaatggatttacaccagttaaaaattttaatgattctaatttt-ttgatgaggta---------gaaaaaagtttaaagatacaattgatttcacagca |
31248488 |
T |
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| Q |
106 |
tatctttcatttggactaaacatagttggatcctctagttcattatttctacaacagatgtttagaaagcaaacttgtgcgctgtggccaaaggaactag |
205 |
Q |
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| T |
31248487 |
tatctttcatttggactaaacatagttggatcctctagttcattatttctacaacagatgtttggaaagcaaacttgtgcgccgtggccaaaagaactag |
31248388 |
T |
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| Q |
206 |
acaattatattacccatattccttcactgatatcaagtggccata |
250 |
Q |
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| T |
31248387 |
acaattatactaaccatattacttcactgctatccagtggccata |
31248343 |
T |
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