View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_24 (Length: 427)
Name: NF8208A_low_24
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 45945928 - 45945532
Alignment:
| Q |
7 |
gcaatcaccaccaccgccgtcaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcccttgtgactttccttgctggaaacgctgatt |
106 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45945928 |
gcaatcaccaccaccgccgtgaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatt |
45945829 |
T |
|
| Q |
107 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcccgaagaacatcg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45945828 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcctgaagaacatcg |
45945729 |
T |
|
| Q |
207 |
taagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945728 |
taagatccttgtttcacaaggttgcattgttaaggagattgctcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaat |
45945629 |
T |
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| Q |
307 |
tactccaaactacgtatctttgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttacacgtagttatggtcc |
403 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945628 |
tactccaaactacgtatcttcgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttacacgtagttatggtcc |
45945532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 323
Target Start/End: Original strand, 55221337 - 55221583
Alignment:
| Q |
77 |
ttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgc |
176 |
Q |
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| T |
55221337 |
ttgtgaccttccttgttggaaatggtgactatgtcaaaggtgtggttggtttagccaaaggtcttcgtaaggtcaaaaccatgtaccctctagtggttgc |
55221436 |
T |
|
| Q |
177 |
tatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaaccaaacc |
276 |
Q |
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| T |
55221437 |
agtgttgcctgatgttcctgagcaacataggaatattctcatcgctcaaggttgcattgttagagagattgcacctgtttaccctcctaagaatcaaacc |
55221536 |
T |
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| Q |
277 |
gaatttgctatggcatattatgtcatcaattactccaaactacgtat |
323 |
Q |
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| T |
55221537 |
caatttgctatggcttattatgtcatcaactactccaaactacgtat |
55221583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 323
Target Start/End: Original strand, 37697482 - 37697720
Alignment:
| Q |
85 |
ttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttac |
184 |
Q |
| |
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|||||||||||||| | |||||| | || ||||||||||||||||| ||||| | | ||| |||||||||||| ||||| || ||||| | |||| |
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| T |
37697482 |
ttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttagtggttgcagtgttac |
37697581 |
T |
|
| Q |
185 |
ctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaaccaaaccgaatttgc |
284 |
Q |
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|||||||||| |||||||| | || || || || |||||||||||||||| || ||||| ||||| || ||||||| |||||||| | ||||| |
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| T |
37697582 |
ctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccagaaaaccaaactcagtttgc |
37697681 |
T |
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| Q |
285 |
tatggcatattatgtcatcaattactccaaactacgtat |
323 |
Q |
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||||| |||||||||||||| ||||||||| ||||||| |
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| T |
37697682 |
catggcttattatgtcatcaactactccaaattacgtat |
37697720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 323
Target Start/End: Complemental strand, 37688037 - 37687798
Alignment:
| Q |
85 |
ttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttac |
184 |
Q |
| |
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|||||||||||||| | |||||| | || ||||||||||||||||| ||||| | | ||| |||||||||||| ||||| || ||||| | |||| |
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| T |
37688037 |
ttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttagtggttgcagtgttac |
37687938 |
T |
|
| Q |
185 |
ctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctcca-gccaaccaaaccgaatttg |
283 |
Q |
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|||||||||| |||||||| | || || || || |||||||||||||||| || ||||| ||||| || |||||| | |||||||| | |||| |
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| T |
37687937 |
ctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccaagaaaaccaaactcagtttg |
37687838 |
T |
|
| Q |
284 |
ctatggcatattatgtcatcaattactccaaactacgtat |
323 |
Q |
| |
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| ||||| |||||||||||||| ||||||||| ||||||| |
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| T |
37687837 |
ccatggcttattatgtcatcaactactccaaattacgtat |
37687798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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