View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_244 (Length: 250)

Name: NF8208A_low_244
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_244
NF8208A_low_244
[»] chr4 (3 HSPs)
chr4 (8-210)||(56171801-56172005)
chr4 (48-162)||(26742492-26742606)
chr4 (121-161)||(31381838-31381879)
[»] chr2 (8 HSPs)
chr2 (8-134)||(17792480-17792605)
chr2 (81-146)||(15261474-15261539)
chr2 (47-165)||(27095680-27095798)
chr2 (47-164)||(44942261-44942378)
chr2 (47-112)||(20607340-20607405)
chr2 (73-158)||(27665601-27665686)
chr2 (119-162)||(40039360-40039403)
chr2 (58-157)||(25067835-25067934)
[»] chr7 (10 HSPs)
chr7 (48-162)||(39990203-39990316)
chr7 (58-156)||(4028168-4028264)
chr7 (47-155)||(36579340-36579448)
chr7 (69-133)||(43256599-43256663)
chr7 (47-165)||(28664940-28665058)
chr7 (45-158)||(5237936-5238050)
chr7 (48-158)||(45457585-45457695)
chr7 (47-158)||(9785299-9785410)
chr7 (87-147)||(23303503-23303563)
chr7 (117-165)||(24988452-24988500)
[»] chr1 (6 HSPs)
chr1 (58-147)||(31609735-31609823)
chr1 (58-158)||(18889058-18889158)
chr1 (57-112)||(31427182-31427237)
chr1 (61-158)||(38783050-38783147)
chr1 (47-157)||(42490876-42490986)
chr1 (117-165)||(17347574-17347622)
[»] chr3 (11 HSPs)
chr3 (47-148)||(5327512-5327613)
chr3 (47-147)||(4219175-4219273)
chr3 (47-162)||(31270304-31270419)
chr3 (58-164)||(13702019-13702125)
chr3 (47-164)||(34960894-34961011)
chr3 (120-161)||(49552389-49552431)
chr3 (47-152)||(49628123-49628228)
chr3 (117-165)||(32080859-32080908)
chr3 (58-165)||(11819058-11819165)
chr3 (123-158)||(29503332-29503368)
chr3 (123-158)||(51202418-51202454)
[»] chr6 (4 HSPs)
chr6 (81-156)||(15175797-15175872)
chr6 (81-156)||(15470296-15470371)
chr6 (88-158)||(7870151-7870221)
chr6 (47-158)||(21507836-21507947)
[»] chr8 (6 HSPs)
chr8 (74-154)||(10952323-10952403)
chr8 (74-154)||(10960328-10960408)
chr8 (59-146)||(19384338-19384425)
chr8 (120-161)||(17949123-17949165)
chr8 (47-162)||(2968507-2968625)
chr8 (47-158)||(37612635-37612746)
[»] chr5 (6 HSPs)
chr5 (47-106)||(374317-374376)
chr5 (120-158)||(10649328-10649367)
chr5 (47-165)||(17331303-17331421)
chr5 (57-105)||(26612049-26612097)
chr5 (47-131)||(39179856-39179939)
chr5 (47-158)||(43493854-43493965)
[»] scaffold0238 (1 HSPs)
scaffold0238 (81-155)||(15739-15813)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 56172005 - 56171801
Alignment:
Q  8 atcagaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaat 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  56172005 atcaaaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcacttatttaactaaaagagaaat 56171906  T
Q  108 aaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcacccatc--tgacggatcaaggaaaagaaaagttgcaacagttaggatttgaa 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  56171905 aaaaatacttcggagggatgatttcaggtcaaaattgacccaaaatcacccatctttgatggatcaaggaaaagaaaagttgcaacagttaggatttgaa 56171806  T
Q  206 aaatg 210  Q
    |||||    
T  56171805 aaatg 56171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 26742492 - 26742606
Alignment:
Q  48 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattgac 146  Q
    ||||||| | |||||||||  ||||||||||| |||| |||||| || ||| | ||||| ||||| | |||||| |||||||||  || ||||||||||     
T  26742492 aaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaagatagaaagaaaaacaattcggatgggtgatttttgggtcaaaattgat 26742590  T
Q  147 ccaaaatcacccatct 162  Q
    || |||||||||||||    
T  26742591 cctaaatcacccatct 26742606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 31381838 - 31381879
Alignment:
Q  121 aggggtgatttcaggtcaa-aattgacccaaaatcacccatc 161  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  31381838 aggggtgatttcaggtcaagaattgacccaaaaccacccatc 31381879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 17792605 - 17792480
Alignment:
Q  8 atcagaataaacaaagtcatgtgagatgacgagaacacaaaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaat 107  Q
    |||| ||||||||||||| ||  ||||||||| | |||||||| ||| | |||||||||| ||||||||||| ||||||||||||||||| ||||||||     
T  17792605 atcaaaataaacaaagtcgtgctagatgacgaaatcacaaaaa-caaacgaaagaaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaag 17792507  T
Q  108 aaaaatacttcggaggggtgatttcag 134  Q
    ||||| | |  ||||||||||||||||    
T  17792506 aaaaacaatatggaggggtgatttcag 17792480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 15261474 - 15261539
Alignment:
Q  81 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 146  Q
    |||| |||||||| |||||||||||| ||||| | |||||| |||||||||| |||||||||||||    
T  15261474 aatcacttatttagctaaaagagaaagaaaaacaattcggaagggtgatttcgggtcaaaattgac 15261539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 27095798 - 27095680
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttc-aggtcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||||||  |||||||||||||    
T  27095798 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgatttttaggtcaaaattga 27095700  T
Q  146 cccaaaatcacccatctgac 165  Q
    ||| ||||||||||||||||    
T  27095699 ccctaaatcacccatctgac 27095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 44942378 - 44942261
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 145  Q
    |||||||| ||||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||| |  |||||||||||| |||  ||||||||||||    
T  44942378 aaaaacaaacaaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaagaaaaaacaactcggaggggtgatttttgggtcaaaattga 44942280  T
Q  146 cccaaaatcacccatctga 164  Q
    ||  |||||||||||||||    
T  44942279 ccataaatcacccatctga 44942261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 20607340 - 20607405
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 112  Q
    |||||||| | |||||||||| ||||||||||| |||| |||| |||||||||| ||||| |||||    
T  20607340 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttagttaactaaaaaagaaagaaaaa 20607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 27665686 - 27665601
Alignment:
Q  73 tatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 158  Q
    ||||||| |||  ||||||||||||||||||||||||||| |  ||| |  |||||||| ||||||||||| | || |||||||||    
T  27665686 tatgtgaaaataacttatttaactaaaagagaaataaaaacaagtcgaattggtgattttaggtcaaaatttatcctaaatcaccc 27665601  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 40039360 - 40039403
Alignment:
Q  119 ggaggggtgatttcaggtcaaaattgacccaaaatcacccatct 162  Q
    |||||||||||||||||||||||||||||| | |||||| ||||    
T  40039360 ggaggggtgatttcaggtcaaaattgaccctacatcaccgatct 40039403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 25067934 - 25067835
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattgacccaaaatcac 156  Q
    |||||||||  ||||||||||| |||| |||||| || ||||| ||||  ||||| |  |||||||||||||||  || ||||||||||||| |||||||    
T  25067934 aaagaaaacagaaaatatgtga-aatcacttattcaattaaaatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcac 25067836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 39990203 - 39990316
Alignment:
Q  48 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 147  Q
    ||||||| | |||||||||| ||||||||||| |||| | |||||||||||| ||||||   ||| | ||||||| |||||||||| |||||||||||||    
T  39990203 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacctatttaactaaa-gagaaagttaaacaattcggagaggtgatttcatgtcaaaattgacc 39990301  T
Q  148 caaaatcacccatct 162  Q
    | |||||| ||||||    
T  39990302 ctaaatcatccatct 39990316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 4028264 - 4028168
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 156  Q
    |||||||||||||||||| ||| || || ||||||||||||||||||||| |||||||  ||   ||||||||||  |||||||||| |||| |||||||    
T  4028264 aaagaaaacttaaaatatatgaaaaatcacttatttaactaaaagagaaagaaaaataagtc---ggggtgattttgggtcaaaattaaccctaaatcac 4028168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 36579340 - 36579448
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 145  Q
    |||||||| |||||||||||  |||||||||| ||||| |||||| |||||  | ||||  ||||| | ||||||||||||| |||| ||||||||||||    
T  36579340 aaaaacaaacaaaagaaaacaaaaaatatgtg-gaatcacttattcaactaggatagaaggaaaaacaattcggaggggtgattttcgggtcaaaattga 36579438  T
Q  146 cccaaaatca 155  Q
    ||| ||||||    
T  36579439 ccctaaatca 36579448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 43256599 - 43256663
Alignment:
Q  69 aaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttca 133  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| | |||  || ||||||||||    
T  43256599 aaaatatgtgataatcacttatttaactaaaagagaaataaaaacaattcaaagtggtgatttca 43256663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 28664940 - 28665058
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||  | ||||  ||||| |  ||||||||||||||| ||| ||||||||||    
T  28664940 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaggatagaaggaaaaacaactcggaggggtgattttagggtcaaaattga 28665038  T
Q  146 cccaaaatcacccatctgac 165  Q
    ||| ||||||||||||||||    
T  28665039 ccctaaatcacccatctgac 28665058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 5238050 - 5237936
Alignment:
Q  45 caaaaaacaagcaaaagaaaacttaaaatatgtgagaa-tcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaatt 143  Q
    |||||||| | |||||||||| | ||||||||||| || || |||||||||||||||||||||  |||| | ||  || |||||||||   |||||| ||    
T  5238050 caaaaaaccaacaaaagaaaattgaaaatatgtgaaaaatctcttatttaactaaaagagaaagcaaaacaatttagaagggtgattttgagtcaaattt 5237951  T
Q  144 gacccaaaatcaccc 158  Q
    ||||| |||||||||    
T  5237950 gaccctaaatcaccc 5237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 45457585 - 45457695
Alignment:
Q  48 aaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcag-gtcaaaattgac 146  Q
    ||||||| | ||||||||| |||||||||||| |||| |||||| || ||| | ||||  ||||| | |||||||| |||||||  | ||||||||||||    
T  45457585 aaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaattcggaggagtgatttttgcgtcaaaattgac 45457683  T
Q  147 ccaaaatcaccc 158  Q
    || |||||||||    
T  45457684 cctaaatcaccc 45457695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 9785410 - 9785299
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    ||||| || |||||||||||  ||||||||||| |||| |||||| || ||| | ||||  ||||| | |||| |||||||||||  || ||||||||||    
T  9785410 aaaaataaacaaaagaaaacaaaaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaattcgaaggggtgatttttgggtcaaaattga 9785312  T
Q  146 cccaaaatcaccc 158  Q
    ||| |||||||||    
T  9785311 ccctaaatcaccc 9785299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 23303563 - 23303503
Alignment:
Q  87 ttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 147  Q
    |||||||||| ||||||||| ||||| | || | |||| ||||||||| ||||||||||||    
T  23303563 ttatttaactgaaagagaaagaaaaacaatttgaagggctgatttcagatcaaaattgacc 23303503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 24988452 - 24988500
Alignment:
Q  117 tcggaggggtgatttcaggtcaaaattgacccaaaatcacccatctgac 165  Q
    |||||||||||||||  |||||||||||||||  |||||||| ||||||    
T  24988452 tcggaggggtgattttgggtcaaaattgaccctgaatcacccctctgac 24988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 31609823 - 31609735
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacc 147  Q
    |||||||||| |||| |||||| |||| || ||| |||||||||||||||||||| | || |||||||||||| ||||||||||||||||    
T  31609823 aaagaaaactaaaaaaatgtga-aatcactcattaaactaaaagagaaataaaaacaatttggaggggtgattgcaggtcaaaattgacc 31609735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 18889158 - 18889058
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcacc 157  Q
    |||||||| | ||| ||||||| ||||  ||||||  |||||||||||||||||| | ||| ||||||||||||  || |||||||||| | ||||||||    
T  18889158 aaagaaaattgaaagtatgtgaaaatcatttattttgctaaaagagaaataaaaacaattcagaggggtgattttcggccaaaattgactctaaatcacc 18889059  T
Q  158 c 158  Q
    |    
T  18889058 c 18889058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 31427182 - 31427237
Alignment:
Q  57 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaa 112  Q
    ||||||||||||||||||||||| |||  ||||||| |||||||||||||| ||||    
T  31427182 aaaagaaaacttaaaatatgtgaaaataacttattttactaaaagagaaattaaaa 31427237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 38783147 - 38783050
Alignment:
Q  61 gaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 158  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||| ||||| | |||  | |  ||||||||| |||||||| |||  |||||||||    
T  38783147 gaaaactgaaaatatgttaaaatcacttatttaactaaaagagaaagaaaaacaattcaaatgaatgatttcagatcaaaattaaccttaaatcaccc 38783050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 42490986 - 42490876
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 145  Q
    |||||||| | |||||||||| || |||||||| |||| |||||| || ||| | ||||  ||||| | ||||||||||||| ||| |||||||| ||||    
T  42490986 aaaaacaaacgaaagaaaactgaagatatgtga-aatcacttattcaattaagatagaacgaaaaacaattcggaggggtgatttttaggtcaaacttga 42490888  T
Q  146 cccaaaatcacc 157  Q
    ||| ||||||||    
T  42490887 ccctaaatcacc 42490876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 17347622 - 17347574
Alignment:
Q  117 tcggaggggtgatttcaggtcaaaattgacccaaaatcacccatctgac 165  Q
    ||||| |||||||||  ||||||||||||||| |||||| |||||||||    
T  17347622 tcggatgggtgatttttggtcaaaattgaccctaaatcatccatctgac 17347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 5327512 - 5327613
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 146  Q
    |||||||| | |||||||||| ||||| ||||| |||| ||||||||||| ||||||||| ||||| | || | ||||||||||| | ||||||||| ||    
T  5327512 aaaaacaaacgaaagaaaactgaaaatttgtgataatcacttatttaactgaaagagaaagaaaaacaatttgcaggggtgattttaagtcaaaattaac 5327611  T
Q  147 cc 148  Q
    ||    
T  5327612 cc 5327613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 4219273 - 4219175
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaaga--gaaataaaaatacttcggaggggtgatttcaggtcaaaattg 144  Q
    |||||||| | |||||||||| ||||||||||| |||| |||||||||||||| ||  |||||| ||    |||||| | ||||||||||||||||||||    
T  4219273 aaaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaactaaaggaaggaaatacaa----ttcggatgagtgatttcaggtcaaaattg 4219178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 31270419 - 31270304
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    |||||||| | ||||||||| |||||||||||| |||| |||||| || ||  | ||||  ||||||| |||| |||||||||||  || ||||||||||    
T  31270419 aaaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattaggatagaaggaaaaataattcgaaggggtgatttttgggtcaaaattga 31270321  T
Q  146 cccaaaatcacccatct 162  Q
    ||| |||||||||||||    
T  31270320 ccctaaatcacccatct 31270304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 13702019 - 13702125
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattgacccaaaatcac 156  Q
    |||||||||  ||||||||||| |||| |||||| || ||  | ||||| ||||||| |||| |||||||| |||  ||||||||||||||| |||||||    
T  13702019 aaagaaaacagaaaatatgtga-aatcacttattcaattatgatagaaagaaaaataattcgaaggggtgacttttgggtcaaaattgaccctaaatcac 13702117  T
Q  157 ccatctga 164  Q
    || |||||    
T  13702118 ccctctga 13702125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 34960894 - 34961011
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtga-tttcaggtcaaaattga 145  Q
    |||||||| | ||||||||| |||||||||||| |||| |||||| || || || ||||  ||||| | ||| ||||||||| |||  ||||||||||||    
T  34960894 aaaaacaaacgaaagaaaacataaaatatgtga-aatcacttattcaattagaatagaagaaaaaacaattctgaggggtgatttttgggtcaaaattga 34960992  T
Q  146 cccaaaatcacccatctga 164  Q
    ||| || |||||| |||||    
T  34960993 ccctaagtcacccctctga 34961011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 49552389 - 49552431
Alignment:
Q  120 gaggggtgatttcaggtcaa-aattgacccaaaatcacccatc 161  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  49552389 gaggggtgatttcaggtcaagaattgacccaaaaccacccatc 49552431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 49628123 - 49628228
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttc-aggtcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| |||||  | ||||  ||||| | ||| ||||||||||||  |||||||||||||    
T  49628123 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaacaattcagaggggtgatttttaggtcaaaattga 49628221  T
Q  146 cccaaaa 152  Q
    |||||||    
T  49628222 cccaaaa 49628228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 32080859 - 32080908
Alignment:
Q  117 tcggaggggtgatttcagg-tcaaaattgacccaaaatcacccatctgac 165  Q
    |||||||||||||||  || ||||||||||||| ||||||||||||||||    
T  32080859 tcggaggggtgatttttgggtcaaaattgaccctaaatcacccatctgac 32080908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 11819165 - 11819058
Alignment:
Q  58 aaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattgacccaaaatcac 156  Q
    ||||||||| |||||||||||| |||| |||||| || |||   ||||  ||||| |  |||||||||||||||  || ||||||||||||| |||||||    
T  11819165 aaagaaaacataaaatatgtga-aatcacttattcaattaaggtagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattgaccctaaatcac 11819067  T
Q  157 ccatctgac 165  Q
    || ||||||    
T  11819066 ccctctgac 11819058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 29503368 - 29503332
Alignment:
Q  123 gggtgatttcaggtcaa-aattgacccaaaatcaccc 158  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29503368 gggtgatttcaggtcaagaattgacccaaaatcaccc 29503332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 51202418 - 51202454
Alignment:
Q  123 gggtgatttcaggtcaa-aattgacccaaaatcaccc 158  Q
    ||||||||||||||||| |||||||||||||||||||    
T  51202418 gggtgatttcaggtcaagaattgacccaaaatcaccc 51202454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 15175872 - 15175797
Alignment:
Q  81 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 156  Q
    |||| ||||||||| ||||| ||||| ||||| | ||||||||||||||||  |||||||||||||| ||||||||    
T  15175872 aatcacttatttaagtaaaatagaaagaaaaacatttcggaggggtgattttgggtcaaaattgaccgaaaatcac 15175797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 15470296 - 15470371
Alignment:
Q  81 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcac 156  Q
    |||| ||||||||| ||||| ||||| ||||| | ||| ||||||||||||  |||||||||||||| ||||||||    
T  15470296 aatcacttatttaagtaaaatagaaagaaaaacatttcagaggggtgattttgggtcaaaattgaccaaaaatcac 15470371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 7870221 - 7870151
Alignment:
Q  88 tatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatcaccc 158  Q
    ||||||||||||||||||| || || | ||| ||  ||||||||||| | ||||||||||| |||||||||    
T  7870221 tatttaactaaaagagaaagaagaacaattccgattggtgatttcagataaaaattgaccctaaatcaccc 7870151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 21507836 - 21507947
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgat-ttcaggtcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| |||||  | ||||  ||||| | || ||||||||||| ||  ||||||||||||    
T  21507836 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaacaatttggaggggtgatgtttgggtcaaaattga 21507934  T
Q  146 cccaaaatcaccc 158  Q
    ||| |||||||||    
T  21507935 ccctaaatcaccc 21507947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 10952323 - 10952403
Alignment:
Q  74 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatc 154  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| |||||||| |||||    
T  10952323 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10952403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 10960328 - 10960408
Alignment:
Q  74 atgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatc 154  Q
    |||||| |||| ||||||||||||||||| ||| ||||||| || | |||||||||||||  |||| |||||||| |||||    
T  10960328 atgtgaaaatcacttatttaactaaaagaaaaagaaaaataatttgaaggggtgatttcaaatcaatattgaccctaaatc 10960408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 19384425 - 19384338
Alignment:
Q  59 aagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgac 146  Q
    |||||| || ||||||||||| |||  ||| ||||||||||||||||| ||||| | |||| |||||| ||||  |||||||||||||    
T  19384425 aagaaagctgaaaatatgtgaaaattacttgtttaactaaaagagaaagaaaaacatttcgaaggggttattttgggtcaaaattgac 19384338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 17949165 - 17949123
Alignment:
Q  120 gaggggtgatttcaggtcaa-aattgacccaaaatcacccatc 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  17949165 gaggggtgatttcaggtcaataattgacccaaaatcacccatc 17949123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 2968625 - 2968507
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggagg---ggtgatttcaggtcaaaatt 143  Q
    |||||||| | |||||||||| ||||||||||| |||| ||||||||| || || | ||| ||||| |  |||||||   ||||||||   |||||||||    
T  2968625 aaaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaattagaatataaagaaaaacaactcggaggagaggtgattttgagtcaaaatt 2968526  T
Q  144 gacccaaaatcacccatct 162  Q
    ||||  ||||||| |||||    
T  2968525 gaccataaatcactcatct 2968507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 37612746 - 37612635
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    |||||||| | ||||||||   ||||||||||| |||| |||||| |||||  | ||||  ||||| | ||||||||||||||||  || ||||||||||    
T  37612746 aaaaacaaacgaaagaaaataaaaaatatgtga-aatcacttattcaactaggatagaaggaaaaaaaattcggaggggtgatttttgggtcaaaattga 37612648  T
Q  146 cccaaaatcaccc 158  Q
    ||| |||||||||    
T  37612647 ccctaaatcaccc 37612635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 374376 - 374317
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaa 106  Q
    |||||||| ||||| |||||| |||||| |||| ||||  ||||||||||||||||||||    
T  374376 aaaaacaaacaaaataaaactgaaaatacgtgaaaatcatttatttaactaaaagagaaa 374317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 10649367 - 10649328
Alignment:
Q  120 gaggggtgatttcaggtcaa-aattgacccaaaatcaccc 158  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10649367 gaggggtgatttcaggtcaagaattgacccaaaatcaccc 10649328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 17331421 - 17331303
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || ||| | ||||  ||||| |  |||||||||||||||  || ||||||||||    
T  17331421 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattaagatagaaggaaaaacaaatcggaggggtgatttttgggtcaaaattga 17331323  T
Q  146 cccaaaatcacccatctgac 165  Q
    ||| ||||||||| ||||||    
T  17331322 ccctaaatcacccctctgac 17331303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 26612097 - 26612049
Alignment:
Q  57 aaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaa 105  Q
    ||||||||||| ||| ||||||| |||| | ||||||||||||||||||    
T  26612097 aaaagaaaactaaaagtatgtgaaaatcacgtatttaactaaaagagaa 26612049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 39179856 - 39179939
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgattt 131  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || || || ||||  ||||||| ||||||||||||||||    
T  39179856 aaaaacaaacgaaagaaaacagaaaatatgtga-aatcacttattcaattagaatagaaggaaaaataattcggaggggtgattt 39179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 43493965 - 43493854
Alignment:
Q  47 aaaaacaagcaaaagaaaacttaaaatatgtgagaatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcagg-tcaaaattga 145  Q
    |||||||| | |||||||||  ||||||||||| |||| |||||| || || || ||||  ||||| | ||||||| ||||||||  || ||||||||||    
T  43493965 aaaaacaaacgaaagaaaacaaaaaatatgtga-aatcacttattcaattagaatagaaggaaaaacaattcggagaggtgatttttggatcaaaattga 43493867  T
Q  146 cccaaaatcaccc 158  Q
    ||| |||||||||    
T  43493866 ccctaaatcaccc 43493854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 15739 - 15813
Alignment:
Q  81 aatcgcttatttaactaaaagagaaataaaaatacttcggaggggtgatttcaggtcaaaattgacccaaaatca 155  Q
    |||| ||||||||| ||||||||||| ||||| | ||  ||  |||||||||| ||||||||||||| |||||||    
T  15739 aatcacttatttaattaaaagagaaagaaaaacaatttagattggtgatttcaagtcaaaattgaccaaaaatca 15813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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