View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_245 (Length: 250)
Name: NF8208A_low_245
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_245 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 12642175 - 12642361
Alignment:
| Q |
58 |
tgttgttagatacattgttaaattcttgttcataatcccatattactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctat |
157 |
Q |
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| T |
12642175 |
tgttattagatacattgttaaattcttgttcataatcccatattactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctat |
12642274 |
T |
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| Q |
158 |
ttataatctttaacacaccatccaataacgtatcattgcatcaattgagacttctcagatttatttcttttgtatattcgttcacat |
244 |
Q |
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| T |
12642275 |
ttataatctttaacacaccatccaataacgtatcattgcatcaattgagacttctcagatttatttcttatgtatattcgttcacat |
12642361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12641928 - 12641983
Alignment:
| Q |
1 |
atactcttccataacatatctcctaaactcttcatattaccactcaatatgttttt |
56 |
Q |
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| T |
12641928 |
atactcttccataatatatctcctaaactcttcatattaccactcaatatgttttt |
12641983 |
T |
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