View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8208A_low_249 (Length: 250)

Name: NF8208A_low_249
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8208A_low_249
NF8208A_low_249
[»] chr6 (27 HSPs)
chr6 (1-250)||(5688750-5689005)
chr6 (1-250)||(5177932-5178176)
chr6 (1-250)||(5279757-5280007)
chr6 (1-111)||(5242504-5242614)
chr6 (1-135)||(5126597-5126731)
chr6 (2-111)||(5427094-5427203)
chr6 (1-213)||(5065338-5065551)
chr6 (5-109)||(5100812-5100916)
chr6 (5-109)||(5135913-5136017)
chr6 (5-103)||(5398243-5398341)
chr6 (1-106)||(5346222-5346327)
chr6 (6-107)||(23127306-23127407)
chr6 (9-120)||(5098412-5098523)
chr6 (5-104)||(5180773-5180872)
chr6 (6-109)||(5351598-5351701)
chr6 (5-109)||(5156007-5156111)
chr6 (5-109)||(5372294-5372398)
chr6 (9-104)||(5283223-5283318)
chr6 (1-111)||(5072674-5072784)
chr6 (1-111)||(5352855-5352965)
chr6 (10-104)||(5439213-5439307)
chr6 (5-109)||(2939112-2939216)
chr6 (2-102)||(5253727-5253827)
chr6 (6-107)||(5124439-5124540)
chr6 (5-78)||(5334382-5334455)
chr6 (9-104)||(5256113-5256208)
chr6 (6-104)||(5448807-5448905)
[»] chr4 (7 HSPs)
chr4 (1-132)||(4122615-4122746)
chr4 (4-182)||(25569036-25569217)
chr4 (1-144)||(4132577-4132717)
chr4 (1-109)||(4319296-4319404)
chr4 (65-111)||(7884147-7884193)
chr4 (66-111)||(4346621-4346666)
chr4 (66-111)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (1-103)||(47985393-47985495)
chr3 (1-103)||(48003967-48004069)
chr3 (1-103)||(47994680-47994782)
chr3 (1-103)||(48013252-48013354)
[»] chr7 (1 HSPs)
chr7 (1-111)||(36212913-36213023)
[»] scaffold0294 (1 HSPs)
scaffold0294 (6-102)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5689005 - 5688750
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5689005 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5688906  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgctattaagagaggt 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  5688905 gatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgctattaagagaggt 5688806  T
Q  198 ctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatg 250  Q
    |||||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  5688805 ctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatg 5688750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 5177932 - 5178176
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5177932 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5178031  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagaggtct 199  Q
    |||||||||||  | ||||| ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||| | | ||||| ||||    
T  5178032 gatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtct 5178125  T
Q  200 cttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatg 250  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5178126 cttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatg 5178176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 5279757 - 5280007
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5279757 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5279856  T
Q  101 gatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagagg 196  Q
    |||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||||| | | ||||| |    
T  5279857 gatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgctttgtcagagaag 5279950  T
Q  197 tctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatg 250  Q
    ||||||||||||||||||| ||| ||||||||||   ||||||||||||||||||||    
T  5279951 tctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatg 5280007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  101 gatgaaccaat 111  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 5126731 - 5126597
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| |||||    
T  5126731 gagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatat 5126632  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtca 135  Q
    |||||||||||  |||||| |||| ||||||||||    
T  5126631 gatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  2 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 101  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  102 atgaaccaat 111  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5065551 - 5065338
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||||||||||| |||||    
T  5065551 gagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatat 5065452  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat-taagagaggtct 199  Q
    |||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| ||||||||| | || | ||| |||    
T  5065451 gatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgctttctaggcgagatct 5065352  T
Q  200 cttctaatgcacaa 213  Q
    ||||| ||||||||    
T  5065351 cttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  105 aacca 109  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  105 aacca 109  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 5398243 - 5398341
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 103  Q
    ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| |||||||||||||| |||||||||    
T  5398243 gtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 5346222 - 5346327
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || |||||||| |||||    
T  5346222 gagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatat 5346321  T
Q  101 gatgaa 106  Q
    ||||||    
T  5346322 gatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  6 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 105  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  106 ac 107  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 5098412 - 5098523
Alignment:
Q  9 tatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacc 108  Q
    ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| |||||||||||||     
T  5098412 tatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaaca 5098511  T
Q  109 aatccgtgaaaa 120  Q
    |||  |||||||    
T  5098512 aattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 5180872 - 5180773
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || ||||||| ||||||||||    
T  5180872 gtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 5351598 - 5351701
Alignment:
Q  6 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 105  Q
    |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |||||||||||||||||||||    
T  5351598 tagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgatga 5351697  T
Q  106 acca 109  Q
    ||||    
T  5351698 acca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5156111 - 5156007
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| |||||||||||||| ||||| ||||    
T  5156111 gtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtatacgatg 5156012  T
Q  105 aacca 109  Q
    |||||    
T  5156011 aacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 5372294 - 5372398
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| ||||||||||||| ||||    
T  5372294 gtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatctcgtatacgatg 5372393  T
Q  105 aacca 109  Q
    |||||    
T  5372394 aacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 5283318 - 5283223
Alignment:
Q  9 tatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||||||||    
T  5283318 tatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5072784 - 5072674
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| ||||     
T  5072784 gagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatatac 5072685  T
Q  101 gatgaaccaat 111  Q
    |||||| ||||    
T  5072684 gatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5352965 - 5352855
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| |||||| ||||||| ||||||    
T  5352965 gagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatat 5352866  T
Q  101 gatgaaccaat 111  Q
    ||| |||||||    
T  5352865 gataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  10 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 2939112 - 2939216
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| ||||||||||||||||||    
T  2939112 gtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgtatatgatg 2939211  T
Q  105 aacca 109  Q
    |||||    
T  2939212 aacca 2939216  T

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Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 5253727 - 5253827
Alignment:
Q  2 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 101  Q
    |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || |||||||||||| ||||||    
T  5253727 agagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatg 5253826  T
Q  102 a 102  Q
    |    
T  5253827 a 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 5124540 - 5124439
Alignment:
Q  6 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 105  Q
    ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | ||| |  ||||||||||    
T  5124540 tagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatga 5124441  T
Q  106 ac 107  Q
    ||    
T  5124440 ac 5124439  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 5334382 - 5334455
Alignment:
Q  5 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 78  Q
    ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334382 gtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 5256208 - 5256113
Alignment:
Q  9 tatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||||||||    
T  5256208 tatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgatg 5256113  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 5448807 - 5448905
Alignment:
Q  6 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 104  Q
    |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||| ||||||||||    
T  5448807 tagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatctggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4122746 - 4122615
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| |||||    
T  4122746 gagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatat 4122647  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatg 132  Q
    |||||||||||| ||||||| || ||||||||    
T  4122646 gatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 182
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  4 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 182  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4132717 - 4132577
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||||    
T  4132717 gagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatat 4132621  T
Q  101 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 144  Q
    |||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132620 gatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4319404 - 4319296
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||||    
T  4319404 gagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatat 4319305  T
Q  101 gatgaacca 109  Q
    |||||||||    
T  4319304 gatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  65 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 111  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  66 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 111  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  66 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 111  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 47985495 - 47985393
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| ||||||    
T  47985495 gagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 47985396  T
Q  101 gat 103  Q
    |||    
T  47985395 gat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48004069 - 48003967
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| ||||||    
T  48004069 gagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 48003970  T
Q  101 gat 103  Q
    |||    
T  48003969 gat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 47994782 - 47994680
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| ||||||    
T  47994782 gagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 47994683  T
Q  101 gat 103  Q
    |||    
T  47994682 gat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48013354 - 48013252
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| ||||||    
T  48013354 gagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 48013255  T
Q  101 gat 103  Q
    |||    
T  48013254 gat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36213023 - 36212913
Alignment:
Q  1 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 100  Q
    |||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  |||||||| | |||    
T  36213023 gagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttat 36212924  T
Q  101 gatgaaccaat 111  Q
    |||||||||||    
T  36212923 gatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  6 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 102  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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