View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_253 (Length: 249)
Name: NF8208A_low_253
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_253 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34974302 - 34974084
Alignment:
| Q |
1 |
acataacacaataaaagaacactgaatgaaattgtaatgatacatttaaatatgttgggtattaatgtaataaaatattatcacgcaactaaaataagat |
100 |
Q |
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| T |
34974302 |
acataacacaataaaagaacactgaatgaaattgtaatgatacatttaaatatgttgggtat------------atattatcaatcaactaaaataagat |
34974215 |
T |
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| Q |
101 |
gtctgtctaaataggagaaacctcacaggagaaatttgatgggagaaactattttttctctctatttttcctctcttaactctacaaaatcaaaacactt |
200 |
Q |
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|||| |||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974214 |
gtctctctaaataagagaaacctcacaggagaaacttcatggaagaaactattttttctctctatttttcctctcttaactctacaaaatcaaaacactt |
34974115 |
T |
|
| Q |
201 |
gttgttgtgttactttgttatgggacgggatgtc |
234 |
Q |
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| T |
34974114 |
g---ttgtgttactttgttctgggacgggatgtc |
34974084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 30986553 - 30986511
Alignment:
| Q |
177 |
taactctacaaaatcaaaacacttgttgttgtgttactttgtt |
219 |
Q |
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| T |
30986553 |
taactctactagaacaaaacacttgttgttgtgttactttgtt |
30986511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 24520039 - 24520071
Alignment:
| Q |
67 |
gtaataaaatattatcacgcaactaaaataaga |
99 |
Q |
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| T |
24520039 |
gtaacaaaatattatcacgcaactaaaataaga |
24520071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 4579354 - 4579322
Alignment:
| Q |
67 |
gtaataaaatattatcacgcaactaaaataaga |
99 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
4579354 |
gtaacaaaatattatcacgcaactaaaataaga |
4579322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 5818527 - 5818559
Alignment:
| Q |
67 |
gtaataaaatattatcacgcaactaaaataaga |
99 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
5818527 |
gtaacaaaatattatcacgcaactaaaataaga |
5818559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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