View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_257 (Length: 249)
Name: NF8208A_low_257
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_257 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 17025397 - 17025162
Alignment:
| Q |
16 |
ggacatcacaagaagaatattattttcatttcatcacctattgtcaaacattatgactatgtccatttttcattgatggaaaattaactttatgcatgga |
115 |
Q |
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| T |
17025397 |
ggacatcacaagaagaatattattttcatttcatcacctattgtcaaacattatgactatgttcatttttcattgatggaaaattaactttatgcattga |
17025298 |
T |
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| Q |
116 |
caaactaatatccaagtatctttctaccttgaagacaatatatatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagct |
215 |
Q |
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| T |
17025297 |
caaactaatatccaagtatctttctaccttgaagacaatatatatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagct |
17025198 |
T |
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| Q |
216 |
ag--tgaagtagatctaactgataagctttttgttg |
249 |
Q |
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| T |
17025197 |
agcatgaatcagatctagctgataagctttttgttg |
17025162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 17002996 - 17002769
Alignment:
| Q |
16 |
ggacatcacaagaagaatattattttcatttcatcacctattgtcaaacattatgactatgtccatttttcattgatggaaaattaactttatgcatgga |
115 |
Q |
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| T |
17002996 |
ggacatcacaagaagaatattattttcatttcatcacctattgtcaaacattatgactatgttcatttttcattgatggaaaattaactttatgcattgc |
17002897 |
T |
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| Q |
116 |
caaacta--atatccaagtatctttctaccttgaagacaatatatatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaag |
213 |
Q |
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| T |
17002896 |
cacactaatatattcacgtatctttgtactttgaagacaatata------tactatatataga--atttcagctctgcattatttagtcaaggcagcaag |
17002805 |
T |
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| Q |
214 |
ctagtgaagtagatctaactgataagctttttgttg |
249 |
Q |
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| T |
17002804 |
ctagtgaagtagatctagctgattagctttatgttg |
17002769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 17036900 - 17036809
Alignment:
| Q |
157 |
atatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagctagtgaagtagatctaactgataagctttttgttg |
249 |
Q |
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| T |
17036900 |
atatttgtactatatatagaacattata-ctatgcattatttagccaacgcagcaaactagtctaacagatctagcttattagctttttgttg |
17036809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 17042826 - 17042697
Alignment:
| Q |
52 |
cctattgtcaaacattatgactatgtccatttttcattgatggaaaattaactttatgcatggacaaactaatatccaagtatctttctaccttgaagac |
151 |
Q |
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| T |
17042826 |
cctattgccaaacatcctgactatgttcatttttcaatgatagtagactaactttataaatggccacacaaattttcacgtatctttgtactttgaaccc |
17042727 |
T |
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| Q |
152 |
aatatatatttgtactatatatagaacattatac |
185 |
Q |
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| T |
17042726 |
aatat----ttgtactatatatagaacattatac |
17042697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 16994839 - 16994779
Alignment:
| Q |
157 |
atatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagctagt |
218 |
Q |
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| T |
16994839 |
atatttgtaatatatatagaacattata-ctatgcattatttagccaacgcagcaaactagt |
16994779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 17018074 - 17018014
Alignment:
| Q |
157 |
atatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagctagt |
218 |
Q |
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| T |
17018074 |
atatttgtaatatatatagaacattata-ctatgcattatttagccaacgcagcaaactagt |
17018014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 17048591 - 17048531
Alignment:
| Q |
157 |
atatttgtactatatatagaacattatacctatgcataatataaccaaggcagcaagctagt |
218 |
Q |
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| T |
17048591 |
atatttgtactatatatagaacattata-ctatgcatcatttagccaacgcagaaaactagt |
17048531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 16988138 - 16988106
Alignment:
| Q |
187 |
tatgcataatataaccaaggcagcaagctagtg |
219 |
Q |
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| T |
16988138 |
tatgcataatatacccaaggcagcaagctagtg |
16988106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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