View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_259 (Length: 249)
Name: NF8208A_low_259
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_259 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 29607414 - 29607643
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttttgcttaaaaa |
108 |
Q |
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| T |
29607414 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttttgcttaaaaa |
29607513 |
T |
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| Q |
109 |
attgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcat |
208 |
Q |
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| T |
29607514 |
attgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtcat |
29607613 |
T |
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| Q |
209 |
tacaacagtcctcttcctctgtccattcat |
238 |
Q |
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| T |
29607614 |
tacaacagtcctcttcctctgtccattcat |
29607643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 55353517 - 55353290
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaa |
107 |
Q |
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| T |
55353517 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaa |
55353418 |
T |
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| Q |
108 |
aattgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatca |
207 |
Q |
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| T |
55353417 |
---tgaccatagggagtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtca |
55353321 |
T |
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| Q |
208 |
ttacaacagtcctcttcctctgtccattcat |
238 |
Q |
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| T |
55353320 |
ttacaaaagtcttcttcctctgcctattcat |
55353290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 18446347 - 18446573
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaa |
107 |
Q |
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| T |
18446347 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaa |
18446446 |
T |
|
| Q |
108 |
aattgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatca |
207 |
Q |
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| T |
18446447 |
---tgaccatagagagttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtca |
18446542 |
T |
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| Q |
208 |
ttacaacagtcctcttcctctgtccattcat |
238 |
Q |
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| T |
18446543 |
ttacaaaagtcctcttcctctgcctattcat |
18446573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 36404125 - 36404338
Alignment:
| Q |
23 |
tcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgaccaaatacagttcaacttt-tgcttaaaaaattgaccacaggg |
121 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||||||| |||||| |||| |
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| T |
36404125 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaa---tgaccataggg |
36404221 |
T |
|
| Q |
122 |
agttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacatcattacaacagtcctc |
221 |
Q |
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| T |
36404222 |
agttccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctc |
36404321 |
T |
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| Q |
222 |
ttcctctgtccattcat |
238 |
Q |
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|||||||| | |||||| |
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| T |
36404322 |
ttcctctgcctattcat |
36404338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 13674233 - 13674274
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaaataatatttactcc |
50 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||| |
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| T |
13674233 |
atggacatcaattttcaccattcacaaataaatatgtactcc |
13674274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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