View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_261 (Length: 248)
Name: NF8208A_low_261
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_261 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 42480220 - 42480449
Alignment:
| Q |
1 |
tataaacatttatggagctattggtttatgctttacttgttgtttgatttatacatgttcaaatttaatttttcctaaattttcctagtcttattgttag |
100 |
Q |
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| T |
42480220 |
tataaacatttatggagctattggtttatgctttacttgttatttgatttatacatgttcaaatttaatttttcctaaattttcctagtcttattgttag |
42480319 |
T |
|
| Q |
101 |
ctacaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacatgtgcattagtagcatc |
200 |
Q |
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| T |
42480320 |
ctacaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacatgtgcattagtagcatc |
42480419 |
T |
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| Q |
201 |
tccattgctgttggtactgagtacagttga |
230 |
Q |
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| T |
42480420 |
tccattgctgttggtactgagtacagttga |
42480449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 42474739 - 42474923
Alignment:
| Q |
3 |
taaacatttatggagctattggtttatgctttacttgttgtttgatttatacatgttcaaatttaatttttcctaaattttcctagtcttattgttagct |
102 |
Q |
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|||||||||| ||||||| |||| |||||||||||||| ||| || |||||||||||| | ||||||||| |||||| ||||||| || |||||| |
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| T |
42474739 |
taaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttca-----attttttcctagattttcttagtctt-ttcttagct |
42474832 |
T |
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| Q |
103 |
acaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacatgtgcattagta |
195 |
Q |
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| T |
42474833 |
acgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcatatgcaactctt--ggtttttccaatggttacatgtgctttagta |
42474923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 42468070 - 42468254
Alignment:
| Q |
3 |
taaacatttatggagctattggtttatgctttacttgttgtttgatttatacatgttcaaatttaatttttcctaaattttcctagtcttattgttagct |
102 |
Q |
| |
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|||||||||||||||||| |||| |||||||| ||||| ||| ||||||| |||||||| ||| ||| || |||||| ||||||| || |||||| |
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| T |
42468070 |
taaacatttatggagctactggtctatgcttttcttgtgattttatttataaatgttcaatttt-----ttcatagattttcttagtctt-ttcttagct |
42468163 |
T |
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| Q |
103 |
acaaacaaactatcccatgatgcatgcaatcttattcttgttgagttatatgcaaatcttaaggtttctccaatggttacatgtgcattagta |
195 |
Q |
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| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||| |
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| T |
42468164 |
gcgtgcaaattattccatgatgcatgcaatcttattcttgttgagtcat--gcaaatcttaaggtttttccaatggttacatgtgctttagta |
42468254 |
T |
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