View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_264 (Length: 248)
Name: NF8208A_low_264
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_264 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 48232050 - 48231823
Alignment:
| Q |
11 |
ccaataatataaccatcaagatagtatgaaaaagtttgtattttcaatgtctgcatactgacatatatcaagaatgacccatttaagataaggttactgt |
110 |
Q |
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| T |
48232050 |
ccaacaatataaccatcaagatagtatgaaaaagtttgtattttcaatgtctgcatactgacatatatcaagaatgacccatttaagataaggttactgt |
48231951 |
T |
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| Q |
111 |
aatacttgtgacatgggtcaaaggcaaaaagttagataatgcaggacactcaccttcactttataattttgtctgtcacttggttttttagtttgtgaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
48231950 |
aatacttgtgacatgggtcaaaggcaaaaagttagataatgcaggacactcactttcactttataattttgtctgtcccttggttttttagtttgagaat |
48231851 |
T |
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| Q |
211 |
ttactataaggctccgatgatgtccatc |
238 |
Q |
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| T |
48231850 |
ttgctataaggctccgataatgtacatc |
48231823 |
T |
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