View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_265 (Length: 248)
Name: NF8208A_low_265
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_265 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 17953640 - 17953852
Alignment:
| Q |
18 |
acatcatttggattaaaataaacaaaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaa |
117 |
Q |
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| T |
17953640 |
acatcatttcgattaaaataaacaaaacttcataatgatgacaaaaatttatttgacatcaaagtaatttcccacataacgattgttggtcctgatagaa |
17953739 |
T |
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| Q |
118 |
aagaacaatgtacaagaaaagaaaaacattgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtca |
217 |
Q |
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| T |
17953740 |
aagaacaatgtacaagaaaagaaaaacaatgaggataataatgtcaatctgaaatgactagtctagtttgaaaaaagaataaagatatgcaaatttgtca |
17953839 |
T |
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| Q |
218 |
cgacaccattcat |
230 |
Q |
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| T |
17953840 |
cgacaccattcat |
17953852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 17721493 - 17721376
Alignment:
| Q |
92 |
cataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaaaacattgaggataataatgtcaatctgaaatgactagtctagtttgaaaa |
191 |
Q |
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| T |
17721493 |
cataacaattgttggtgctgatagaaaagaacaatgtacatgaga----------tgagattcataatgttaatctgaaatgactaatctagtttg-aaa |
17721405 |
T |
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| Q |
192 |
aagaataaagatatgcaaatttgtcacga |
220 |
Q |
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| T |
17721404 |
aagaataaagatatgcaaatatttcacga |
17721376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 19022722 - 19022605
Alignment:
| Q |
92 |
cataacgattgttggtcctgatagaaaagaacaatgtacaagaaaagaaaaacattgaggataataatgtcaatctgaaatgactagtctagtttgaaaa |
191 |
Q |
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| T |
19022722 |
cataacaattgttggtgctgatagaaaagaacaatgtacatgaga----------tgagattcataatgttaatctgaaatgactaatctagtttg-aaa |
19022634 |
T |
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| Q |
192 |
aagaataaagatatgcaaatttgtcacga |
220 |
Q |
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| T |
19022633 |
aagaataaagatatgcaaatatttcacga |
19022605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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