View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_266 (Length: 248)
Name: NF8208A_low_266
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_266 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 40551823 - 40552044
Alignment:
| Q |
9 |
aacagagacatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaa |
108 |
Q |
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| T |
40551823 |
aacaaagatatgaatgcgaaataaccatgcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtgatctaaacaactgaa |
40551922 |
T |
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| Q |
109 |
aacaataataccactgaactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagat |
208 |
Q |
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| T |
40551923 |
aacaataataccacagaactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaaattgccctaggaaaagat |
40552022 |
T |
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| Q |
209 |
aaataggcgcaaggcaagaact |
230 |
Q |
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||||| |||||||||||||||| |
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| T |
40552023 |
aaataagcgcaaggcaagaact |
40552044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 40569110 - 40569173
Alignment:
| Q |
125 |
aactactgaaacaatccgtatatgattaatttttcaaaaactgcacacgtataatttagtttaaaa |
190 |
Q |
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| T |
40569110 |
aactactgaaacagtcggtatatgactaatttttcaaaaactgcata--tataatttagtttaaaa |
40569173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 15110423 - 15110539
Alignment:
| Q |
37 |
gcataagagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataataccactgaactactgaaac |
136 |
Q |
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| T |
15110423 |
gcataagagtacaaatgtaagtacgtaaatttgtcaccctatcccaattttagagtaatccgaacaaccaaaaacaataataccacaaaactattaaaac |
15110522 |
T |
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| Q |
137 |
aatccgtatatgattaa |
153 |
Q |
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| T |
15110523 |
aatccgtatataattaa |
15110539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 15109972 - 15109895
Alignment:
| Q |
42 |
agagtacagatttaagtatgtaaatttgtcgccctatcccaatgttagagtaatctaaacaactgaaaacaataatac |
119 |
Q |
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| T |
15109972 |
agagtacaaatttaagtacgtaaatttgtcaccctatcccaatgttagagtaatccaaacaaccaaaaacaagaatac |
15109895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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