View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_271 (Length: 247)
Name: NF8208A_low_271
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_271 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold1163 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 5951617 - 5951849
Alignment:
| Q |
15 |
acatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacgcagaattattaga |
114 |
Q |
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| T |
5951617 |
acatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacacagaattattaga |
5951716 |
T |
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| Q |
115 |
gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactgtgtgccggctgcgaaccac |
214 |
Q |
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| T |
5951717 |
gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactgtgtgccggctgcgaaccac |
5951816 |
T |
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| Q |
215 |
gaagaatcgctgctagacctaggtcaccaattt |
247 |
Q |
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| T |
5951817 |
gaagaatcgctgctagacccaggtcaccaattt |
5951849 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 31951754 - 31951825
Alignment:
| Q |
15 |
acatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa |
86 |
Q |
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| T |
31951754 |
acatcagcaagttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa |
31951825 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 28188450 - 28188377
Alignment:
| Q |
174 |
aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattt |
247 |
Q |
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| T |
28188450 |
aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaattt |
28188377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 18077779 - 18077837
Alignment:
| Q |
174 |
aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagac |
232 |
Q |
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| T |
18077779 |
aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagac |
18077837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 36630179 - 36630239
Alignment:
| Q |
18 |
tcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg |
78 |
Q |
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| T |
36630179 |
tcaacaagttcattgtattcttcctcataaagctctggggccatgaattctggagtacctg |
36630239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
| Q |
24 |
agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg |
78 |
Q |
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| T |
27092402 |
agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg |
27092456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
| Q |
24 |
agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg |
78 |
Q |
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| T |
27185899 |
agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg |
27185845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 2254 - 2290
Alignment:
| Q |
23 |
aagttcattgtattcttcttcgtacaactctggtgcc |
59 |
Q |
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| T |
2254 |
aagttcattgtattcttcttcgtacaattctggtgcc |
2290 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 22396846 - 22396882
Alignment:
| Q |
23 |
aagttcattgtattcttcttcgtacaactctggtgcc |
59 |
Q |
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| T |
22396846 |
aagttcattttattcttcttcgtacaattctggtgcc |
22396882 |
T |
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