View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8208A_low_276 (Length: 247)
Name: NF8208A_low_276
Description: NF8208A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8208A_low_276 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 33857025 - 33856802
Alignment:
| Q |
6 |
agaaaagaatcaaaataaatctggtataataggaattaattaatcgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagccc |
105 |
Q |
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| T |
33857025 |
agaaaagaatcaaaataaatctggtataataggaattaattaattgatagagatttcaaatgtatgaatagtgaaaatagaactcaattcaaaaaagccc |
33856926 |
T |
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| Q |
106 |
ataacccaaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttc-ccccactatctcaaaatttaagcgcctttcctt |
204 |
Q |
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| T |
33856925 |
ataacccaaagtcaacccactaatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttccccccactatctcaaaatttaagcgcctttcctt |
33856826 |
T |
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| Q |
205 |
aattacttttcccactttctttat |
228 |
Q |
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| T |
33856825 |
aattacttttcccactttctttat |
33856802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 31489506 - 31489604
Alignment:
| Q |
97 |
aaaaagcccataacccaaagtcaacccac-taatcaatttcaacggaacaatccgaaaatttcgtcttcccgcttcccccactatctcaaaatttaagcg |
195 |
Q |
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| T |
31489506 |
aaaaagcccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaatcctaaaatttcg-ctt-ccgctttccccatcatctcataatttaagcg |
31489603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 26141646 - 26141766
Alignment:
| Q |
103 |
cccataacccaaagtcaacccac-taatcaatttcaa-cggaacaatccgaaaatttcgtcttcccgcttcccccactatctcaaaatttaagcgcc-tt |
199 |
Q |
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| T |
26141646 |
cccataaaccaaagtcaacccacgtaatcaattccaaccgtaaaaatcctaaaatttcgt-ttccgctttccctcattatctcagaatttaagcaccttt |
26141744 |
T |
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| Q |
200 |
tccttaattacttttcccactt |
221 |
Q |
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|||||| ||| |||||||||| |
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| T |
26141745 |
tccttatatacctttcccactt |
26141766 |
T |
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